Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RPS29P11-201ENST00000496507 171 ntBASIC2.87□□□□□ -1.95
RNFT1Q5M7Z0 RNU6-56P-201ENST00000516986 93 ntBASIC2.87□□□□□ -1.95
RNFT1Q5M7Z0 RNA5SP380-201ENST00000517190 98 ntBASIC2.87□□□□□ -1.95
RNFT1Q5M7Z0 SNORA31.26-201ENST00000517250 137 ntBASIC2.87□□□□□ -1.95
RNFT1Q5M7Z0 SNORD14A-201ENST00000606526 91 ntBASIC2.87□□□□□ -1.95
RNFT1Q5M7Z0 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.87□□□□□ -1.95
RNFT1Q5M7Z0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.87□□□□□ -1.95
RNFT1Q5M7Z0 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.87□□□□□ -1.95
RNFT1Q5M7Z0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
RNFT1Q5M7Z0 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 RNA5SP493-201ENST00000364115 91 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 RNU6-1067P-201ENST00000384752 107 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 SNORD28B-201ENST00000390993 75 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 SNORD77.2-201ENST00000391045 68 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 RNU6-141P-201ENST00000410499 105 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 AC074348.1-201ENST00000426503 132 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 SNORD123-201ENST00000459473 70 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 RNU7-12P-201ENST00000516030 62 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 RNU6-303P-201ENST00000517091 106 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 AP000753.3-201ENST00000604083 169 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 Z97988.1-201ENST00000637697 135 ntBASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.86□□□□□ -1.95
RNFT1Q5M7Z0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 SNORA80A-201ENST00000363922 136 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 SNORA68.1-201ENST00000364537 132 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 SNORA25B-201ENST00000365507 128 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 RNU6-811P-201ENST00000384069 107 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 RNU6-950P-201ENST00000384651 107 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 SNORA11.2-201ENST00000408318 127 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 Y_RNA.596-201ENST00000410462 109 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 COTL1P1-201ENST00000422309 375 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 AC093423.1-201ENST00000440817 142 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 AC093850.1-201ENST00000454121 251 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 AC023141.11-201ENST00000508864 202 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 MIR3169-201ENST00000578032 83 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 SCARNA15.3-201ENST00000626315 122 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 SCARNA4.1-201ENST00000628597 123 ntBASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.85□□□□□ -1.95
RNFT1Q5M7Z0 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
RNFT1Q5M7Z0 RNU6-499P-201ENST00000365615 107 ntBASIC2.84□□□□□ -1.95
RNFT1Q5M7Z0 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
RNFT1Q5M7Z0 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.84□□□□□ -1.95
RNFT1Q5M7Z0 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
RNFT1Q5M7Z0 AC245060.5-201ENST00000610778 3293 ntBASIC2.84□□□□□ -1.96
RNFT1Q5M7Z0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
RNFT1Q5M7Z0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 MIR627-201ENST00000384979 97 ntBASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 RNU6-663P-201ENST00000391105 106 ntBASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 SNRPGP12-201ENST00000449481 213 ntBASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 RPL12P50-201ENST00000603116 116 ntBASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 AL137790.1-201ENST00000634283 177 ntBASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 MIR622-201ENST00000638396 96 ntBASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
RNFT1Q5M7Z0 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 RNU6-1019P-201ENST00000364424 107 ntBASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 RNY1P2-201ENST00000364820 117 ntBASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 SNORD67-201ENST00000390833 111 ntBASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 HSPE1P9-201ENST00000440046 311 ntBASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 MIR3616-201ENST00000584070 92 ntBASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 MIR6852-201ENST00000621699 66 ntBASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 MIR664A-201ENST00000626086 82 ntBASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.82□□□□□ -1.96
RNFT1Q5M7Z0 AL365361.1-201ENST00000566942 3481 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 SNORA38-201ENST00000363946 132 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 SNORD56.5-201ENST00000364281 72 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 RNY1P13-201ENST00000365030 105 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 SNORD15B-201ENST00000384714 146 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 RNA5SP492-201ENST00000411330 114 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 UBBP3-201ENST00000445497 241 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 RN7SL442P-201ENST00000473804 320 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 SNORA18.5-201ENST00000516616 101 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 AC133485.1-201ENST00000567176 124 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 AC069114.2-201ENST00000604699 304 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 AC022513.1-201ENST00000624512 117 ntBASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
RNFT1Q5M7Z0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
RNFT1Q5M7Z0 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
RNFT1Q5M7Z0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.8□□□□□ -1.96
RNFT1Q5M7Z0 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
RNFT1Q5M7Z0 RNU6-23P-201ENST00000363283 107 ntBASIC2.8□□□□□ -1.96
RNFT1Q5M7Z0 SNORA71.1-201ENST00000364523 117 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms