Protein–RNA interactions for Protein: Q9BWG4

SSBP4, Single-stranded DNA-binding protein 4, humanhuman

Predicted RBP Predictions only

Length 385 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4Q9BWG4 RNU7-137P-201ENST00000516788 62 ntBASIC2.57□□□□□ -2
SSBP4Q9BWG4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.57□□□□□ -2
SSBP4Q9BWG4 MIR6716-201ENST00000613413 80 ntBASIC2.57□□□□□ -2
SSBP4Q9BWG4 AP001362.1-201ENST00000625165 124 ntBASIC2.57□□□□□ -2
SSBP4Q9BWG4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
SSBP4Q9BWG4 MAPK10-322ENST00000641485 4530 ntBASIC2.56□□□□□ -2
SSBP4Q9BWG4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.56□□□□□ -2
SSBP4Q9BWG4 SNORD115-3-201ENST00000363100 82 ntBASIC2.56□□□□□ -2
SSBP4Q9BWG4 AC087499.7-201ENST00000441958 109 ntBASIC2.56□□□□□ -2
SSBP4Q9BWG4 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.56□□□□□ -2
SSBP4Q9BWG4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.56□□□□□ -2
SSBP4Q9BWG4 Y_RNA.788-201ENST00000622394 112 ntBASIC2.56□□□□□ -2
SSBP4Q9BWG4 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.56□□□□□ -2
SSBP4Q9BWG4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.56□□□□□ -2
SSBP4Q9BWG4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
SSBP4Q9BWG4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SSBP4Q9BWG4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.55□□□□□ -2
SSBP4Q9BWG4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.55□□□□□ -2
SSBP4Q9BWG4 RNU6-624P-201ENST00000363411 107 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 SNORA70C-201ENST00000384538 135 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 SNORA40.18-201ENST00000391200 128 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 RNA5SP317-201ENST00000410176 116 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 RNA5SP311-201ENST00000411290 116 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.55□□□□□ -2
SSBP4Q9BWG4 RPS29P12-201ENST00000460178 152 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.55□□□□□ -2
SSBP4Q9BWG4 RNU1-143P-201ENST00000516296 146 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 RNA5SP315-201ENST00000516340 116 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 RNA5SP312-201ENST00000517068 116 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.55□□□□□ -2
SSBP4Q9BWG4 AC026271.5-201ENST00000577873 130 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 AC087499.8-201ENST00000578406 226 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 U1.23-201ENST00000610293 146 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 MIR8055-201ENST00000610739 97 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 RNU1-68P-201ENST00000615382 146 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 MIR8065-201ENST00000620577 100 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 U1.39-201ENST00000621562 146 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 AC022513.1-201ENST00000624512 117 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 MIR6830-201ENST00000636015 70 ntBASIC2.55□□□□□ -2
SSBP4Q9BWG4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
SSBP4Q9BWG4 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
SSBP4Q9BWG4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
SSBP4Q9BWG4 Y_RNA.340-201ENST00000365330 92 ntBASIC2.54□□□□□ -2
SSBP4Q9BWG4 RNU6-411P-201ENST00000384451 107 ntBASIC2.54□□□□□ -2
SSBP4Q9BWG4 MIR30B-201ENST00000384850 88 ntBASIC2.54□□□□□ -2
SSBP4Q9BWG4 AC034105.4-201ENST00000568304 277 ntBASIC2.54□□□□□ -2
SSBP4Q9BWG4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.54□□□□□ -2
SSBP4Q9BWG4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
SSBP4Q9BWG4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SSBP4Q9BWG4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SSBP4Q9BWG4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SSBP4Q9BWG4 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.53□□□□□ -2
SSBP4Q9BWG4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.53□□□□□ -2
SSBP4Q9BWG4 RNU1-109P-201ENST00000383960 147 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 RNU6-1031P-201ENST00000384773 107 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 RNA5SP492-201ENST00000411330 114 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 AL117339.2-201ENST00000430475 180 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.53□□□□□ -2
SSBP4Q9BWG4 RNU6-557P-201ENST00000516842 110 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 SCARNA20.6-201ENST00000517251 106 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.53□□□□□ -2
SSBP4Q9BWG4 PARP1P2-201ENST00000556806 195 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 MIR5094-201ENST00000578766 85 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 MIR8066-201ENST00000617280 78 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 RNA5SP196-201ENST00000625967 102 ntBASIC2.53□□□□□ -2
SSBP4Q9BWG4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
SSBP4Q9BWG4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
SSBP4Q9BWG4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 RNU6-686P-201ENST00000364839 107 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 UBBP3-201ENST00000445497 241 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 RPL23AP6-201ENST00000446637 472 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 SNORD4B-201ENST00000459083 72 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 RN7SL75P-201ENST00000461926 281 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 AC026402.1-201ENST00000513642 170 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 RNA5SP217-201ENST00000515959 91 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 MIR3134-201ENST00000579433 74 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 MIR3616-201ENST00000584070 92 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 RPL12P50-201ENST00000603116 116 ntBASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
SSBP4Q9BWG4 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 MIRLET7A1-201ENST00000362295 80 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 RNU1-58P-201ENST00000362413 163 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 RNA5SP133-201ENST00000363368 119 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 SNORD56.5-201ENST00000364281 72 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 SNORD21-201ENST00000383953 95 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 RNU1-13P-201ENST00000384499 162 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 Z96811.1-201ENST00000445880 108 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 RPS29P11-201ENST00000496507 171 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 CYP3A52P-201ENST00000563326 91 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 SNORD14A-201ENST00000606526 91 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 U4.6-201ENST00000621618 127 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 Z97988.1-201ENST00000637697 135 ntBASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
SSBP4Q9BWG4 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms