Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS9D1Q9Y2B5 GABRG2-229ENST00000641017 3628 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 RNA5SP42-201ENST00000364278 115 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 Y_RNA.264-201ENST00000364665 102 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 RNU6-499P-201ENST00000365615 107 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 SNORD77.2-201ENST00000391045 68 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 SNORD105B-201ENST00000458770 79 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 RNU7-12P-201ENST00000516030 62 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 MIR548AR-201ENST00000582191 57 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 MIR8055-201ENST00000610739 97 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 MIR8065-201ENST00000620577 100 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 AC110079.1-202ENST00000635213 138 ntBASIC3.59□□□□□ -1.83
VPS9D1Q9Y2B5 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
VPS9D1Q9Y2B5 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 SNORD28B-201ENST00000390993 75 ntBASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 RN7SL330P-201ENST00000469709 307 ntBASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 RN7SL594P-201ENST00000470590 287 ntBASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 RPS29P11-201ENST00000496507 171 ntBASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 SNORA31.10-201ENST00000516482 106 ntBASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 AL121772.2-201ENST00000614331 297 ntBASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
VPS9D1Q9Y2B5 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 MIR208A-201ENST00000362287 71 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 RNU6-1072P-201ENST00000384703 107 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 RNU6-443P-201ENST00000384780 107 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 RNU6-663P-201ENST00000391105 106 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 SNORA11.4-201ENST00000408823 129 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 RPS29P31-201ENST00000446147 164 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 snoU13.16-201ENST00000459350 104 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 RNA5SP168-201ENST00000516642 112 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 MIR4738-201ENST00000579134 87 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS9D1Q9Y2B5 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 SNORA73.2-201ENST00000364946 201 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 RNU6-811P-201ENST00000384069 107 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 Y_RNA.537-201ENST00000384626 109 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 RNU6-1067P-201ENST00000384752 107 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 AL034345.1-201ENST00000407768 123 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 ATP5A1P2-201ENST00000412323 255 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 AC093850.1-201ENST00000454121 251 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 Y_RNA.648-201ENST00000459455 110 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 AC018868.1-201ENST00000491307 315 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 RNU6-303P-201ENST00000517091 106 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 AP000753.3-201ENST00000604083 169 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 MIR7851-201ENST00000610611 160 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 RNVU1-4-201ENST00000612985 164 ntBASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS9D1Q9Y2B5 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 SNORA70.4-201ENST00000365509 134 ntBASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 MIR520H-201ENST00000385126 88 ntBASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 MIR154-201ENST00000385243 84 ntBASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 MIR1262-201ENST00000408276 93 ntBASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 snoU13.22-201ENST00000459428 104 ntBASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 SNORD123-201ENST00000459473 70 ntBASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 MIR3186-201ENST00000577404 85 ntBASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 XIST_intron.1-201ENST00000619444 68 ntBASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.55□□□□□ -1.84
VPS9D1Q9Y2B5 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
VPS9D1Q9Y2B5 AL355596.1-201ENST00000565399 3996 ntBASIC3.54□□□□□ -1.84
VPS9D1Q9Y2B5 RNA5SP493-201ENST00000364115 91 ntBASIC3.54□□□□□ -1.84
VPS9D1Q9Y2B5 RNU6-1241P-201ENST00000384536 107 ntBASIC3.54□□□□□ -1.84
VPS9D1Q9Y2B5 RNU6ATAC-201ENST00000408749 126 ntBASIC3.54□□□□□ -1.84
VPS9D1Q9Y2B5 AC074348.1-201ENST00000426503 132 ntBASIC3.54□□□□□ -1.84
VPS9D1Q9Y2B5 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 RNA5SP292-201ENST00000390974 118 ntBASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 AC093578.1-201ENST00000415219 368 ntBASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 AL133547.1-201ENST00000448546 220 ntBASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 BX510359.1-201ENST00000456973 237 ntBASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 SNORA18.5-201ENST00000516616 101 ntBASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 SNORA70.19-201ENST00000516717 90 ntBASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 SNORD14A-201ENST00000606526 91 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms