Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CNTNAP3BQ96NU0 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.32□□□□□ -1.88
CNTNAP3BQ96NU0 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CNTNAP3BQ96NU0 AC091152.2-201ENST00000591628 2569 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 RNU6-478P-201ENST00000363904 110 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 SNORA68.1-201ENST00000364537 132 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 snoU2-30.1-201ENST00000365012 70 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 Y_RNA.336-201ENST00000365307 109 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 RNU6-987P-201ENST00000384759 104 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 RNU4-47P-201ENST00000410876 114 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 RN7SL330P-201ENST00000469709 307 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 AP002004.2-201ENST00000531656 154 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 MIR3186-201ENST00000577404 85 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 MIR7153-201ENST00000637758 57 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 AP000553.6-201ENST00000641242 118 ntBASIC3.31□□□□□ -1.88
CNTNAP3BQ96NU0 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 MIR340-201ENST00000362125 95 ntBASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 RNU6-1084P-201ENST00000362498 107 ntBASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 Y_RNA.118-201ENST00000363300 101 ntBASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 Y_RNA.164-201ENST00000363709 102 ntBASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 AL109933.2-201ENST00000452651 260 ntBASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 RNU7-96P-201ENST00000459535 64 ntBASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 SNORD45.4-201ENST00000516629 73 ntBASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 AC005336.3-201ENST00000623833 2679 ntBASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.3□□□□□ -1.88
CNTNAP3BQ96NU0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 snoU2-30.2-201ENST00000362805 70 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 Y_RNA.57-201ENST00000362806 113 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 SNORD68-201ENST00000363214 84 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 RNU6-1244P-201ENST00000363614 108 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 Y_RNA.494-201ENST00000384432 111 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 RNU6-129P-201ENST00000391022 107 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 SNORA40.18-201ENST00000391200 128 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 RNA5SP467-201ENST00000391274 118 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 AL445685.2-201ENST00000422551 342 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 AC244505.4-201ENST00000434905 287 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 SSXP5-201ENST00000443473 287 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 snoU13.23-201ENST00000458863 104 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 RNU6-991P-201ENST00000516168 107 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 AC008011.1-201ENST00000545989 227 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 ZNF861P-201ENST00000588126 639 ntBASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.29□□□□□ -1.88
CNTNAP3BQ96NU0 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 RNU6-1094P-201ENST00000362416 104 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 SNORD38.1-201ENST00000363863 68 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 RNA5SP424-201ENST00000390988 115 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 RNU4-37P-201ENST00000410214 84 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 ARF4P2-201ENST00000430209 526 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 AC023141.11-201ENST00000508864 202 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 RNU6-917P-201ENST00000516294 104 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 RNU6-548P-201ENST00000517083 115 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 MIR4319-201ENST00000577285 85 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 XIST_intron.1-201ENST00000619444 68 ntBASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CNTNAP3BQ96NU0 SNORD115-37-201ENST00000363768 82 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 Y_RNA.226-201ENST00000364337 114 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 SNORA80E-201ENST00000384744 137 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 RNU6-1319P-201ENST00000390855 104 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 RNU6-747P-201ENST00000390928 104 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 RNU6-241P-201ENST00000391148 104 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 RNU6-177P-201ENST00000411257 104 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 AL135938.1-201ENST00000443141 297 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 RNA5SP33-201ENST00000516687 98 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 MIR6841-201ENST00000637129 72 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 U6.98-201ENST00000637157 84 ntBASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.27□□□□□ -1.89
CNTNAP3BQ96NU0 Y_RNA.386-201ENST00000383913 105 ntBASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 RNA5SP184-201ENST00000411071 108 ntBASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 AL357552.1-201ENST00000445254 415 ntBASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 RPS29P31-201ENST00000446147 164 ntBASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 RNU7-45P-201ENST00000459460 63 ntBASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 RPS29P12-201ENST00000460178 152 ntBASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 RNA5SP208-201ENST00000516156 78 ntBASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 MIR3134-201ENST00000579433 74 ntBASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 AL353149.1-201ENST00000610667 244 ntBASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CNTNAP3BQ96NU0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CNTNAP3BQ96NU0 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CNTNAP3BQ96NU0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
CNTNAP3BQ96NU0 RNU1-23P-201ENST00000363361 144 ntBASIC3.25□□□□□ -1.89
CNTNAP3BQ96NU0 MIR561-201ENST00000385216 97 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms