Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH5O43196 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC5.79□□□□□ -1.48
MSH5O43196 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.78□□□□□ -1.48
MSH5O43196 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
MSH5O43196 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH5O43196 MIR203A-201ENST00000384836 110 ntBASIC5.78□□□□□ -1.48
MSH5O43196 MIR200C-201ENST00000384980 68 ntBASIC5.78□□□□□ -1.48
MSH5O43196 RNA5SP306-201ENST00000411087 107 ntBASIC5.78□□□□□ -1.48
MSH5O43196 TVP23BP1-201ENST00000557500 617 ntBASIC5.78□□□□□ -1.48
MSH5O43196 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC5.78□□□□□ -1.48
MSH5O43196 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH5O43196 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.77□□□□□ -1.49
MSH5O43196 AL162151.2-201ENST00000448875 158 ntBASIC5.77□□□□□ -1.49
MSH5O43196 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH5O43196 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
MSH5O43196 SNORA71.3-201ENST00000362582 128 ntBASIC5.76□□□□□ -1.49
MSH5O43196 MIR630-201ENST00000384957 97 ntBASIC5.76□□□□□ -1.49
MSH5O43196 RPS29P7-201ENST00000439662 171 ntBASIC5.76□□□□□ -1.49
MSH5O43196 RNU7-119P-201ENST00000459279 63 ntBASIC5.76□□□□□ -1.49
MSH5O43196 RNU6-1089P-201ENST00000516473 104 ntBASIC5.76□□□□□ -1.49
MSH5O43196 AC015688.6-201ENST00000577737 104 ntBASIC5.76□□□□□ -1.49
MSH5O43196 MIR4727-201ENST00000622232 55 ntBASIC5.76□□□□□ -1.49
MSH5O43196 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.75□□□□□ -1.49
MSH5O43196 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
MSH5O43196 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH5O43196 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.75□□□□□ -1.49
MSH5O43196 AC104389.3-201ENST00000445629 235 ntBASIC5.75□□□□□ -1.49
MSH5O43196 CYP4A43P-201ENST00000568156 121 ntBASIC5.75□□□□□ -1.49
MSH5O43196 AC113403.1-201ENST00000604910 193 ntBASIC5.75□□□□□ -1.49
MSH5O43196 AC008133.2-201ENST00000624540 351 ntBASIC5.75□□□□□ -1.49
MSH5O43196 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSH5O43196 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH5O43196 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
MSH5O43196 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.75□□□□□ -1.49
MSH5O43196 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH5O43196 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
MSH5O43196 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
MSH5O43196 SNORA11.2-201ENST00000408318 127 ntBASIC5.74□□□□□ -1.49
MSH5O43196 RN7SKP177-201ENST00000410567 355 ntBASIC5.74□□□□□ -1.49
MSH5O43196 AC017083.1-201ENST00000428093 483 ntBASIC5.74□□□□□ -1.49
MSH5O43196 GTF3AP2-201ENST00000557014 266 ntBASIC5.74□□□□□ -1.49
MSH5O43196 MTRNR2L2-201ENST00000604882 87 ntBASIC5.74□□□□□ -1.49
MSH5O43196 MIR6867-201ENST00000610636 67 ntBASIC5.74□□□□□ -1.49
MSH5O43196 MIR6509-201ENST00000614603 85 ntBASIC5.74□□□□□ -1.49
MSH5O43196 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH5O43196 AL161431.1-201ENST00000618966 4205 ntBASIC5.74□□□□□ -1.49
MSH5O43196 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH5O43196 AC087190.4-201ENST00000574616 8334 ntBASIC5.73□□□□□ -1.49
MSH5O43196 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH5O43196 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.73□□□□□ -1.49
MSH5O43196 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.73□□□□□ -1.49
MSH5O43196 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH5O43196 MAPK10-320ENST00000641462 6696 ntBASIC5.73□□□□□ -1.49
MSH5O43196 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
MSH5O43196 TRAJ51-201ENST00000504127 63 ntBASIC5.73□□□□□ -1.49
MSH5O43196 AC103810.8-201ENST00000607347 118 ntBASIC5.73□□□□□ -1.49
MSH5O43196 MIR8059-201ENST00000620427 81 ntBASIC5.73□□□□□ -1.49
MSH5O43196 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH5O43196 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH5O43196 RNU6-1039P-201ENST00000383931 107 ntBASIC5.72□□□□□ -1.49
MSH5O43196 RNU6-1083P-201ENST00000384022 107 ntBASIC5.72□□□□□ -1.49
MSH5O43196 RNA5SP445-201ENST00000515889 115 ntBASIC5.72□□□□□ -1.49
MSH5O43196 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH5O43196 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSH5O43196 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
MSH5O43196 RNU6-461P-201ENST00000364195 107 ntBASIC5.71□□□□□ -1.5
MSH5O43196 RNU6ATAC-201ENST00000408749 126 ntBASIC5.71□□□□□ -1.5
MSH5O43196 SNORA11.4-201ENST00000408823 129 ntBASIC5.71□□□□□ -1.5
MSH5O43196 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSH5O43196 RPL23AP42-201ENST00000471152 471 ntBASIC5.71□□□□□ -1.5
MSH5O43196 Y_RNA.809-201ENST00000516058 95 ntBASIC5.71□□□□□ -1.5
MSH5O43196 RNU6-667P-201ENST00000517186 102 ntBASIC5.71□□□□□ -1.5
MSH5O43196 AL360157.1-201ENST00000565962 87 ntBASIC5.71□□□□□ -1.5
MSH5O43196 AC008739.3-201ENST00000603262 127 ntBASIC5.71□□□□□ -1.5
MSH5O43196 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.71□□□□□ -1.5
MSH5O43196 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSH5O43196 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSH5O43196 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSH5O43196 RNU6-54P-201ENST00000365563 107 ntBASIC5.7□□□□□ -1.5
MSH5O43196 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC5.7□□□□□ -1.5
MSH5O43196 SCARNA13-201ENST00000516672 275 ntBASIC5.7□□□□□ -1.5
MSH5O43196 MIR3690-201ENST00000580266 75 ntBASIC5.7□□□□□ -1.5
MSH5O43196 SNORA4-201ENST00000584302 138 ntBASIC5.7□□□□□ -1.5
MSH5O43196 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC5.7□□□□□ -1.5
MSH5O43196 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH5O43196 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSH5O43196 RNA5SP22-201ENST00000365393 109 ntBASIC5.69□□□□□ -1.5
MSH5O43196 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.69□□□□□ -1.5
MSH5O43196 RNA5SP137-201ENST00000516833 135 ntBASIC5.69□□□□□ -1.5
MSH5O43196 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.69□□□□□ -1.5
MSH5O43196 AL161756.2-201ENST00000604597 246 ntBASIC5.69□□□□□ -1.5
MSH5O43196 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH5O43196 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH5O43196 MIR767-201ENST00000390228 109 ntBASIC5.68□□□□□ -1.5
MSH5O43196 CKS1BP2-201ENST00000497342 240 ntBASIC5.68□□□□□ -1.5
MSH5O43196 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH5O43196 MIR548X-201ENST00000580069 75 ntBASIC5.68□□□□□ -1.5
MSH5O43196 RN7SL600P-201ENST00000581811 299 ntBASIC5.68□□□□□ -1.5
MSH5O43196 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.68□□□□□ -1.5
MSH5O43196 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 156.7 ms