Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL17A1Q9UMD9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
COL17A1Q9UMD9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 RFPL4AP1-201ENST00000530883 850 ntBASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 IRF8-202ENST00000562492 946 ntTSL 3 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 PAM16-208ENST00000573553 722 ntTSL 2 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL17A1Q9UMD9 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 MCCD1P1-208ENST00000445732 328 ntBASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 ANKRD18DP-204ENST00000455355 1975 ntBASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL17A1Q9UMD9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 CAND2-206ENST00000626378 333 ntTSL 5 BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 HTR5BP-201ENST00000430851 1154 ntBASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 MIR5100-201ENST00000579544 119 ntBASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC28.59■■■□□ 2.17
COL17A1Q9UMD9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC28.58■■■□□ 2.17
COL17A1Q9UMD9 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 POM121L3P-201ENST00000419331 1163 ntBASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 AL591684.3-201ENST00000605187 298 ntBASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 AC010240.3-201ENST00000607688 395 ntBASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC28.57■■■□□ 2.16
COL17A1Q9UMD9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 AC007225.1-201ENST00000566331 1836 ntBASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC28.56■■■□□ 2.16
COL17A1Q9UMD9 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms