Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDX2Q99626 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CDX2Q99626 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CDX2Q99626 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDX2Q99626 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.74■□□□□ 0.75
CDX2Q99626 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.74■□□□□ 0.75
CDX2Q99626 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CDX2Q99626 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.74■□□□□ 0.75
CDX2Q99626 AC021087.4-201ENST00000563761 564 ntBASIC19.74■□□□□ 0.75
CDX2Q99626 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.74■□□□□ 0.75
CDX2Q99626 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.74■□□□□ 0.75
CDX2Q99626 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CDX2Q99626 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CDX2Q99626 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDX2Q99626 GUSBP5-202ENST00000510805 1989 ntBASIC19.74■□□□□ 0.75
CDX2Q99626 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CDX2Q99626 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CDX2Q99626 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.73■□□□□ 0.75
CDX2Q99626 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 AC012640.2-201ENST00000561606 901 ntBASIC19.73■□□□□ 0.75
CDX2Q99626 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.73■□□□□ 0.75
CDX2Q99626 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.73■□□□□ 0.75
CDX2Q99626 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.73■□□□□ 0.75
CDX2Q99626 AC024563.2-201ENST00000603282 481 ntBASIC19.73■□□□□ 0.75
CDX2Q99626 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.73■□□□□ 0.75
CDX2Q99626 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CDX2Q99626 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 AC007225.1-201ENST00000566331 1836 ntBASIC19.73■□□□□ 0.75
CDX2Q99626 KRT8P7-201ENST00000533003 1432 ntBASIC19.73■□□□□ 0.75
CDX2Q99626 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX2Q99626 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.73■□□□□ 0.75
CDX2Q99626 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.72■□□□□ 0.75
CDX2Q99626 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.72■□□□□ 0.75
CDX2Q99626 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 RCN1P2-201ENST00000398357 915 ntBASIC19.72■□□□□ 0.75
CDX2Q99626 AC007967.2-201ENST00000432613 625 ntBASIC19.72■□□□□ 0.75
CDX2Q99626 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.72■□□□□ 0.75
CDX2Q99626 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.72■□□□□ 0.75
CDX2Q99626 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.72■□□□□ 0.75
CDX2Q99626 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.72■□□□□ 0.75
CDX2Q99626 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
CDX2Q99626 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.72■□□□□ 0.75
CDX2Q99626 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.72■□□□□ 0.75
CDX2Q99626 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CDX2Q99626 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.72■□□□□ 0.75
CDX2Q99626 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX2Q99626 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.71■□□□□ 0.75
CDX2Q99626 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CDX2Q99626 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.71■□□□□ 0.75
CDX2Q99626 AC106028.4-201ENST00000614509 607 ntBASIC19.71■□□□□ 0.75
CDX2Q99626 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CDX2Q99626 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.71■□□□□ 0.75
CDX2Q99626 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX2Q99626 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.7■□□□□ 0.74
CDX2Q99626 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.7■□□□□ 0.74
CDX2Q99626 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
CDX2Q99626 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
CDX2Q99626 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms