Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.74■□□□□ 0.59
VPS35Q96QK1 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.74■□□□□ 0.59
VPS35Q96QK1 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.73■□□□□ 0.59
VPS35Q96QK1 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS35Q96QK1 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS35Q96QK1 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS35Q96QK1 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS35Q96QK1 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS35Q96QK1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VPS35Q96QK1 INGX-201ENST00000359239 846 ntBASIC18.72■□□□□ 0.59
VPS35Q96QK1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS35Q96QK1 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS35Q96QK1 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.72■□□□□ 0.59
VPS35Q96QK1 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS35Q96QK1 AP003041.3-201ENST00000527151 707 ntBASIC18.72■□□□□ 0.59
VPS35Q96QK1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.72■□□□□ 0.59
VPS35Q96QK1 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.72■□□□□ 0.59
VPS35Q96QK1 FAM87A-204ENST00000613235 858 ntBASIC18.72■□□□□ 0.59
VPS35Q96QK1 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VPS35Q96QK1 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
VPS35Q96QK1 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS35Q96QK1 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS35Q96QK1 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS35Q96QK1 AC087289.5-201ENST00000586076 3175 ntBASIC18.72■□□□□ 0.59
VPS35Q96QK1 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS35Q96QK1 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS35Q96QK1 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 ECEL1P2-202ENST00000465689 757 ntBASIC18.71■□□□□ 0.59
VPS35Q96QK1 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 AC008622.2-201ENST00000617006 1229 ntBASIC18.71■□□□□ 0.59
VPS35Q96QK1 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS35Q96QK1 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS35Q96QK1 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VPS35Q96QK1 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms