Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TTC28Q96AY4 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.19■□□□□ 0.66
TTC28Q96AY4 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.19■□□□□ 0.66
TTC28Q96AY4 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TTC28Q96AY4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TTC28Q96AY4 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TTC28Q96AY4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TTC28Q96AY4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TTC28Q96AY4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TTC28Q96AY4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.19■□□□□ 0.66
TTC28Q96AY4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.19■□□□□ 0.66
TTC28Q96AY4 AC021087.4-201ENST00000563761 564 ntBASIC19.19■□□□□ 0.66
TTC28Q96AY4 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TTC28Q96AY4 AC002310.6-201ENST00000624451 1377 ntBASIC19.19■□□□□ 0.66
TTC28Q96AY4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.19■□□□□ 0.66
TTC28Q96AY4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TTC28Q96AY4 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TTC28Q96AY4 AL162377.1-201ENST00000618844 1793 ntBASIC19.19■□□□□ 0.66
TTC28Q96AY4 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TTC28Q96AY4 RPS2P28-201ENST00000314255 741 ntBASIC19.18■□□□□ 0.66
TTC28Q96AY4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TTC28Q96AY4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TTC28Q96AY4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 DPP3P2-201ENST00000416030 1696 ntBASIC19.18■□□□□ 0.66
TTC28Q96AY4 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TTC28Q96AY4 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TTC28Q96AY4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 MTDHP3-201ENST00000594186 672 ntBASIC19.18■□□□□ 0.66
TTC28Q96AY4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.18■□□□□ 0.66
TTC28Q96AY4 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TTC28Q96AY4 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TTC28Q96AY4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TTC28Q96AY4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TTC28Q96AY4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TTC28Q96AY4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TTC28Q96AY4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TTC28Q96AY4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TTC28Q96AY4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TTC28Q96AY4 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TTC28Q96AY4 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TTC28Q96AY4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TTC28Q96AY4 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 GUSBP12-201ENST00000513727 720 ntBASIC19.16■□□□□ 0.66
TTC28Q96AY4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 GPR32P1-201ENST00000601788 811 ntBASIC19.16■□□□□ 0.66
TTC28Q96AY4 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TTC28Q96AY4 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TTC28Q96AY4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TTC28Q96AY4 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TTC28Q96AY4 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TTC28Q96AY4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 MIR4745-201ENST00000577608 62 ntBASIC19.15■□□□□ 0.66
TTC28Q96AY4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TTC28Q96AY4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 AP005117.1-201ENST00000584346 1413 ntBASIC19.15■□□□□ 0.66
TTC28Q96AY4 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 AL139400.1-201ENST00000366220 510 ntBASIC19.15■□□□□ 0.66
TTC28Q96AY4 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TTC28Q96AY4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TTC28Q96AY4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TTC28Q96AY4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms