Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.4■□□□□ 0.54
LMX1AQ8TE12 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.4■□□□□ 0.54
LMX1AQ8TE12 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LMX1AQ8TE12 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
LMX1AQ8TE12 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.39■□□□□ 0.54
LMX1AQ8TE12 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LMX1AQ8TE12 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.39■□□□□ 0.54
LMX1AQ8TE12 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 TEX21P-204ENST00000641479 1693 ntBASIC18.39■□□□□ 0.53
LMX1AQ8TE12 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 SPDYE13P-201ENST00000445314 798 ntBASIC18.39■□□□□ 0.53
LMX1AQ8TE12 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 AC125437.2-201ENST00000625180 2167 ntBASIC18.39■□□□□ 0.53
LMX1AQ8TE12 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1AQ8TE12 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 AL645929.1-201ENST00000420084 975 ntBASIC18.38■□□□□ 0.53
LMX1AQ8TE12 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 KRT126P-201ENST00000549467 1181 ntBASIC18.38■□□□□ 0.53
LMX1AQ8TE12 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 AC112497.1-201ENST00000624824 639 ntBASIC18.38■□□□□ 0.53
LMX1AQ8TE12 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.38■□□□□ 0.53
LMX1AQ8TE12 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
LMX1AQ8TE12 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
LMX1AQ8TE12 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms