Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP38Q8NB14 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP38Q8NB14 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.08■□□□□ 0.97
USP38Q8NB14 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.08■□□□□ 0.97
USP38Q8NB14 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.08■□□□□ 0.97
USP38Q8NB14 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.08■□□□□ 0.97
USP38Q8NB14 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.08■□□□□ 0.97
USP38Q8NB14 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.08■□□□□ 0.97
USP38Q8NB14 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP38Q8NB14 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.08■□□□□ 0.97
USP38Q8NB14 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.08■□□□□ 0.97
USP38Q8NB14 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP38Q8NB14 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.08■□□□□ 0.96
USP38Q8NB14 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
USP38Q8NB14 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP38Q8NB14 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP38Q8NB14 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
USP38Q8NB14 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 AC093484.2-201ENST00000580996 2166 ntBASIC21.07■□□□□ 0.96
USP38Q8NB14 TNXA-203ENST00000507684 2038 ntBASIC21.07■□□□□ 0.96
USP38Q8NB14 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
USP38Q8NB14 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.07■□□□□ 0.96
USP38Q8NB14 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
USP38Q8NB14 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.07■□□□□ 0.96
USP38Q8NB14 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.07■□□□□ 0.96
USP38Q8NB14 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.07■□□□□ 0.96
USP38Q8NB14 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.07■□□□□ 0.96
USP38Q8NB14 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
USP38Q8NB14 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.07■□□□□ 0.96
USP38Q8NB14 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.07■□□□□ 0.96
USP38Q8NB14 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.07■□□□□ 0.96
USP38Q8NB14 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP38Q8NB14 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
USP38Q8NB14 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
USP38Q8NB14 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
USP38Q8NB14 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
USP38Q8NB14 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.06■□□□□ 0.96
USP38Q8NB14 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.06■□□□□ 0.96
USP38Q8NB14 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
USP38Q8NB14 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
USP38Q8NB14 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.06■□□□□ 0.96
USP38Q8NB14 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.06■□□□□ 0.96
USP38Q8NB14 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
USP38Q8NB14 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.06■□□□□ 0.96
USP38Q8NB14 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.06■□□□□ 0.96
USP38Q8NB14 HOMER2P1-201ENST00000455653 964 ntBASIC21.06■□□□□ 0.96
USP38Q8NB14 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.06■□□□□ 0.96
USP38Q8NB14 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.06■□□□□ 0.96
USP38Q8NB14 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.06■□□□□ 0.96
USP38Q8NB14 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.06■□□□□ 0.96
USP38Q8NB14 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 CR769767.2-201ENST00000622735 460 ntBASIC21.06■□□□□ 0.96
USP38Q8NB14 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
USP38Q8NB14 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.06■□□□□ 0.96
USP38Q8NB14 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
USP38Q8NB14 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
USP38Q8NB14 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP38Q8NB14 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP38Q8NB14 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP38Q8NB14 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
USP38Q8NB14 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP38Q8NB14 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP38Q8NB14 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP38Q8NB14 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP38Q8NB14 AL845331.1-201ENST00000424978 1190 ntBASIC21.05■□□□□ 0.96
USP38Q8NB14 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.05■□□□□ 0.96
USP38Q8NB14 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.05■□□□□ 0.96
USP38Q8NB14 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.05■□□□□ 0.96
USP38Q8NB14 AP003041.3-201ENST00000527151 707 ntBASIC21.05■□□□□ 0.96
USP38Q8NB14 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
USP38Q8NB14 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.05■□□□□ 0.96
USP38Q8NB14 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
USP38Q8NB14 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.05■□□□□ 0.96
USP38Q8NB14 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
USP38Q8NB14 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.05■□□□□ 0.96
USP38Q8NB14 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.05■□□□□ 0.96
USP38Q8NB14 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
USP38Q8NB14 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms