Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VRK3Q8IV63 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VRK3Q8IV63 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VRK3Q8IV63 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VRK3Q8IV63 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VRK3Q8IV63 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VRK3Q8IV63 AC087499.1-201ENST00000418141 1075 ntBASIC18.46■□□□□ 0.55
VRK3Q8IV63 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 MIR4674-201ENST00000582457 87 ntBASIC18.46■□□□□ 0.55
VRK3Q8IV63 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VRK3Q8IV63 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
VRK3Q8IV63 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VRK3Q8IV63 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
VRK3Q8IV63 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.46■□□□□ 0.54
VRK3Q8IV63 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.54
VRK3Q8IV63 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
VRK3Q8IV63 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VRK3Q8IV63 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.45■□□□□ 0.54
VRK3Q8IV63 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.45■□□□□ 0.54
VRK3Q8IV63 GPAT2P1-201ENST00000444924 1672 ntBASIC18.45■□□□□ 0.54
VRK3Q8IV63 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.45■□□□□ 0.54
VRK3Q8IV63 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.45■□□□□ 0.54
VRK3Q8IV63 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VRK3Q8IV63 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VRK3Q8IV63 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.45■□□□□ 0.54
VRK3Q8IV63 AC068587.9-201ENST00000641814 219 ntBASIC18.45■□□□□ 0.54
VRK3Q8IV63 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VRK3Q8IV63 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.45■□□□□ 0.54
VRK3Q8IV63 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.45■□□□□ 0.54
VRK3Q8IV63 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
VRK3Q8IV63 HEIH-201ENST00000623091 1652 ntBASIC18.44■□□□□ 0.54
VRK3Q8IV63 RCC2P3-201ENST00000418112 1537 ntBASIC18.44■□□□□ 0.54
VRK3Q8IV63 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.44■□□□□ 0.54
VRK3Q8IV63 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VRK3Q8IV63 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.44■□□□□ 0.54
VRK3Q8IV63 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 AC092338.2-201ENST00000568827 1415 ntBASIC18.44■□□□□ 0.54
VRK3Q8IV63 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 TSPY14P-201ENST00000303979 915 ntBASIC18.44■□□□□ 0.54
VRK3Q8IV63 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VRK3Q8IV63 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.44■□□□□ 0.54
VRK3Q8IV63 SLC25A1P2-201ENST00000430693 912 ntBASIC18.44■□□□□ 0.54
VRK3Q8IV63 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 NAPSB-206ENST00000562112 1266 ntBASIC18.44■□□□□ 0.54
VRK3Q8IV63 C2orf69P3-201ENST00000565542 1120 ntBASIC18.44■□□□□ 0.54
VRK3Q8IV63 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.44■□□□□ 0.54
VRK3Q8IV63 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.44■□□□□ 0.54
VRK3Q8IV63 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VRK3Q8IV63 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 AL023284.2-201ENST00000405850 579 ntBASIC18.43■□□□□ 0.54
VRK3Q8IV63 AC007663.1-201ENST00000438948 1240 ntBASIC18.43■□□□□ 0.54
VRK3Q8IV63 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 AP003041.3-201ENST00000527151 707 ntBASIC18.43■□□□□ 0.54
VRK3Q8IV63 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 AL353719.1-201ENST00000566847 864 ntBASIC18.43■□□□□ 0.54
VRK3Q8IV63 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms