Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS13CQ709C8 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS13CQ709C8 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS13CQ709C8 AC091607.1-201ENST00000490318 1060 ntBASIC15.74■□□□□ 0.11
VPS13CQ709C8 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
VPS13CQ709C8 MIR3917-201ENST00000580971 93 ntBASIC15.74■□□□□ 0.11
VPS13CQ709C8 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13CQ709C8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
VPS13CQ709C8 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VPS13CQ709C8 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS13CQ709C8 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS13CQ709C8 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13CQ709C8 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13CQ709C8 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 AC125437.2-201ENST00000625180 2167 ntBASIC15.73■□□□□ 0.11
VPS13CQ709C8 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 PGAM5P1-201ENST00000518923 814 ntBASIC15.73■□□□□ 0.11
VPS13CQ709C8 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS13CQ709C8 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13CQ709C8 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 AC008556.1-201ENST00000610908 2040 ntBASIC15.72■□□□□ 0.11
VPS13CQ709C8 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 AL590627.1-203ENST00000421194 1026 ntBASIC15.72■□□□□ 0.11
VPS13CQ709C8 AL773604.1-201ENST00000617417 272 ntBASIC15.72■□□□□ 0.11
VPS13CQ709C8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 AL162377.1-201ENST00000618844 1793 ntBASIC15.72■□□□□ 0.11
VPS13CQ709C8 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS13CQ709C8 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13CQ709C8 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS13CQ709C8 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS13CQ709C8 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS13CQ709C8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13CQ709C8 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS13CQ709C8 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13CQ709C8 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS13CQ709C8 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS13CQ709C8 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13CQ709C8 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13CQ709C8 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS13CQ709C8 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13CQ709C8 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.71■□□□□ 0.11
VPS13CQ709C8 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13CQ709C8 ANKRD18DP-204ENST00000455355 1975 ntBASIC15.71■□□□□ 0.11
VPS13CQ709C8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS13CQ709C8 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms