Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.2■□□□□ 0.66
USP39Q53GS9 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.2■□□□□ 0.66
USP39Q53GS9 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.19■□□□□ 0.66
USP39Q53GS9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
USP39Q53GS9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.19■□□□□ 0.66
USP39Q53GS9 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.19■□□□□ 0.66
USP39Q53GS9 GCSHP2-201ENST00000560971 527 ntBASIC19.19■□□□□ 0.66
USP39Q53GS9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.19■□□□□ 0.66
USP39Q53GS9 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.19■□□□□ 0.66
USP39Q53GS9 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.19■□□□□ 0.66
USP39Q53GS9 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.19■□□□□ 0.66
USP39Q53GS9 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
USP39Q53GS9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP39Q53GS9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.18■□□□□ 0.66
USP39Q53GS9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP39Q53GS9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP39Q53GS9 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP39Q53GS9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP39Q53GS9 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP39Q53GS9 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.18■□□□□ 0.66
USP39Q53GS9 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.18■□□□□ 0.66
USP39Q53GS9 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP39Q53GS9 AC083849.1-201ENST00000615227 514 ntBASIC19.18■□□□□ 0.66
USP39Q53GS9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
USP39Q53GS9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.18■□□□□ 0.66
USP39Q53GS9 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP39Q53GS9 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP39Q53GS9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.18■□□□□ 0.66
USP39Q53GS9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.17■□□□□ 0.66
USP39Q53GS9 KRT8P11-201ENST00000409686 1436 ntBASIC19.17■□□□□ 0.66
USP39Q53GS9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP39Q53GS9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
USP39Q53GS9 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP39Q53GS9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP39Q53GS9 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
USP39Q53GS9 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP39Q53GS9 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP39Q53GS9 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
USP39Q53GS9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USP39Q53GS9 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.17■□□□□ 0.66
USP39Q53GS9 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.17■□□□□ 0.66
USP39Q53GS9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.17■□□□□ 0.66
USP39Q53GS9 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.17■□□□□ 0.66
USP39Q53GS9 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.17■□□□□ 0.66
USP39Q53GS9 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.17■□□□□ 0.66
USP39Q53GS9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.17■□□□□ 0.66
USP39Q53GS9 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP39Q53GS9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP39Q53GS9 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
USP39Q53GS9 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
USP39Q53GS9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
USP39Q53GS9 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP39Q53GS9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP39Q53GS9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
USP39Q53GS9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
USP39Q53GS9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.16■□□□□ 0.66
USP39Q53GS9 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP39Q53GS9 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.16■□□□□ 0.66
USP39Q53GS9 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.16■□□□□ 0.66
USP39Q53GS9 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.16■□□□□ 0.66
USP39Q53GS9 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
USP39Q53GS9 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.16■□□□□ 0.66
USP39Q53GS9 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.16■□□□□ 0.66
USP39Q53GS9 HYMAI.1-201ENST00000620949 238 ntBASIC19.16■□□□□ 0.66
USP39Q53GS9 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP39Q53GS9 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP39Q53GS9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP39Q53GS9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP39Q53GS9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP39Q53GS9 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
USP39Q53GS9 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.16■□□□□ 0.66
USP39Q53GS9 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP39Q53GS9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP39Q53GS9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.16■□□□□ 0.66
USP39Q53GS9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP39Q53GS9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP39Q53GS9 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USP39Q53GS9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
USP39Q53GS9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP39Q53GS9 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms