Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.52□□□□□ -0.25
COL7A1Q02388 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL7A1Q02388 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL7A1Q02388 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL7A1Q02388 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.52□□□□□ -0.25
COL7A1Q02388 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL7A1Q02388 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL7A1Q02388 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC13.52□□□□□ -0.25
COL7A1Q02388 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
COL7A1Q02388 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC13.51□□□□□ -0.25
COL7A1Q02388 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC13.51□□□□□ -0.25
COL7A1Q02388 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC13.51□□□□□ -0.25
COL7A1Q02388 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.51□□□□□ -0.25
COL7A1Q02388 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC13.51□□□□□ -0.25
COL7A1Q02388 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
COL7A1Q02388 AL512408.1-201ENST00000569378 2000 ntBASIC13.51□□□□□ -0.25
COL7A1Q02388 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC13.51□□□□□ -0.25
COL7A1Q02388 TREX1-205ENST00000625293 1783 ntBASIC13.51□□□□□ -0.25
COL7A1Q02388 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.51□□□□□ -0.25
COL7A1Q02388 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC13.51□□□□□ -0.25
COL7A1Q02388 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC13.51□□□□□ -0.25
COL7A1Q02388 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC13.51□□□□□ -0.25
COL7A1Q02388 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL7A1Q02388 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL7A1Q02388 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 EMD-201ENST00000369835 966 ntTSL 3 BASIC13.5□□□□□ -0.25
COL7A1Q02388 SCARNA2-201ENST00000458748 420 ntBASIC13.5□□□□□ -0.25
COL7A1Q02388 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
COL7A1Q02388 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC13.5□□□□□ -0.25
COL7A1Q02388 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC13.5□□□□□ -0.25
COL7A1Q02388 AC145285.3-201ENST00000564603 959 ntBASIC13.5□□□□□ -0.25
COL7A1Q02388 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.5□□□□□ -0.25
COL7A1Q02388 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC13.5□□□□□ -0.25
COL7A1Q02388 MIR3180-5-201ENST00000583743 153 ntBASIC13.5□□□□□ -0.25
COL7A1Q02388 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC13.5□□□□□ -0.25
COL7A1Q02388 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC13.5□□□□□ -0.25
COL7A1Q02388 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.5□□□□□ -0.25
COL7A1Q02388 AL592071.1-201ENST00000611956 408 ntBASIC13.5□□□□□ -0.25
COL7A1Q02388 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
COL7A1Q02388 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC13.5□□□□□ -0.25
COL7A1Q02388 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC13.5□□□□□ -0.25
COL7A1Q02388 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.5□□□□□ -0.25
COL7A1Q02388 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 AC134684.3-201ENST00000641758 218 ntBASIC13.5□□□□□ -0.25
COL7A1Q02388 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL7A1Q02388 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
COL7A1Q02388 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.5□□□□□ -0.25
COL7A1Q02388 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC13.5□□□□□ -0.25
COL7A1Q02388 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.5□□□□□ -0.25
COL7A1Q02388 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL7A1Q02388 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 HOXB1-202ENST00000577092 1414 ntBASIC13.49□□□□□ -0.25
COL7A1Q02388 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
COL7A1Q02388 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.49□□□□□ -0.25
COL7A1Q02388 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.49□□□□□ -0.25
COL7A1Q02388 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC13.49□□□□□ -0.25
COL7A1Q02388 LINC01711-201ENST00000598340 967 ntBASIC13.49□□□□□ -0.25
COL7A1Q02388 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL7A1Q02388 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 AC112907.3-201ENST00000577781 2400 ntBASIC13.49□□□□□ -0.25
COL7A1Q02388 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms