Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF4P78317 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RNF4P78317 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF4P78317 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF4P78317 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF4P78317 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF4P78317 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RNF4P78317 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
RNF4P78317 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF4P78317 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF4P78317 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF4P78317 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF4P78317 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF4P78317 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF4P78317 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.47■□□□□ 0.39
RNF4P78317 RN7SL850P-201ENST00000579959 291 ntBASIC17.47■□□□□ 0.39
RNF4P78317 MIR4674-201ENST00000582457 87 ntBASIC17.47■□□□□ 0.39
RNF4P78317 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
RNF4P78317 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
RNF4P78317 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
RNF4P78317 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RNF4P78317 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 GPAT2P1-201ENST00000444924 1672 ntBASIC17.47■□□□□ 0.39
RNF4P78317 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF4P78317 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF4P78317 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
RNF4P78317 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
RNF4P78317 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF4P78317 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
RNF4P78317 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RNF4P78317 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RNF4P78317 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.46■□□□□ 0.39
RNF4P78317 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.46■□□□□ 0.39
RNF4P78317 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 AL512353.2-201ENST00000448759 1962 ntBASIC17.46■□□□□ 0.39
RNF4P78317 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF4P78317 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
RNF4P78317 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
RNF4P78317 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
RNF4P78317 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
RNF4P78317 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.46■□□□□ 0.39
RNF4P78317 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
RNF4P78317 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.46■□□□□ 0.39
RNF4P78317 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.46■□□□□ 0.39
RNF4P78317 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF4P78317 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
RNF4P78317 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF4P78317 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF4P78317 KRT8P45-201ENST00000414328 1447 ntBASIC17.46■□□□□ 0.39
RNF4P78317 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.46■□□□□ 0.38
RNF4P78317 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
RNF4P78317 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.46■□□□□ 0.38
RNF4P78317 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
RNF4P78317 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.45■□□□□ 0.38
RNF4P78317 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 AL023284.2-201ENST00000405850 579 ntBASIC17.45■□□□□ 0.38
RNF4P78317 TMPOP1-202ENST00000424642 1267 ntBASIC17.45■□□□□ 0.38
RNF4P78317 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.45■□□□□ 0.38
RNF4P78317 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.45■□□□□ 0.38
RNF4P78317 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.45■□□□□ 0.38
RNF4P78317 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.45■□□□□ 0.38
RNF4P78317 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 AL138966.2-201ENST00000621997 464 ntBASIC17.45■□□□□ 0.38
RNF4P78317 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms