Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
SMARCA1P28370 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
SMARCA1P28370 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
SMARCA1P28370 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 COX11P1-201ENST00000489116 835 ntBASIC21.68■■□□□ 1.06
SMARCA1P28370 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.68■■□□□ 1.06
SMARCA1P28370 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.68■■□□□ 1.06
SMARCA1P28370 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
SMARCA1P28370 HOXB1-202ENST00000577092 1414 ntBASIC21.68■■□□□ 1.06
SMARCA1P28370 MTMR9LP-203ENST00000426597 1545 ntBASIC21.68■■□□□ 1.06
SMARCA1P28370 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
SMARCA1P28370 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.67■■□□□ 1.06
SMARCA1P28370 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.67■■□□□ 1.06
SMARCA1P28370 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 AC006333.2-201ENST00000607957 2099 ntBASIC21.67■■□□□ 1.06
SMARCA1P28370 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.67■■□□□ 1.06
SMARCA1P28370 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.67■■□□□ 1.06
SMARCA1P28370 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.67■■□□□ 1.06
SMARCA1P28370 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SMARCA1P28370 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 TMPOP1-202ENST00000424642 1267 ntBASIC21.67■■□□□ 1.06
SMARCA1P28370 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.67■■□□□ 1.06
SMARCA1P28370 AC009947.2-201ENST00000444014 672 ntBASIC21.67■■□□□ 1.06
SMARCA1P28370 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SMARCA1P28370 KRT18P41-201ENST00000518924 1277 ntBASIC21.67■■□□□ 1.06
SMARCA1P28370 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.67■■□□□ 1.06
SMARCA1P28370 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.67■■□□□ 1.06
SMARCA1P28370 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.67■■□□□ 1.06
SMARCA1P28370 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SMARCA1P28370 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SMARCA1P28370 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMARCA1P28370 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.66■■□□□ 1.06
SMARCA1P28370 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SMARCA1P28370 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.66■■□□□ 1.06
SMARCA1P28370 AC036111.1-201ENST00000533973 1582 ntBASIC21.66■■□□□ 1.06
SMARCA1P28370 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
SMARCA1P28370 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.66■■□□□ 1.06
SMARCA1P28370 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
SMARCA1P28370 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SMARCA1P28370 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 KRT18P57-201ENST00000443599 1254 ntBASIC21.66■■□□□ 1.06
SMARCA1P28370 AC104076.2-201ENST00000448912 469 ntBASIC21.66■■□□□ 1.06
SMARCA1P28370 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 KRT18P21-201ENST00000515767 1272 ntBASIC21.66■■□□□ 1.06
SMARCA1P28370 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.66■■□□□ 1.06
SMARCA1P28370 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SMARCA1P28370 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.66■■□□□ 1.06
SMARCA1P28370 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SMARCA1P28370 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMARCA1P28370 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.65■■□□□ 1.06
SMARCA1P28370 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.65■■□□□ 1.06
SMARCA1P28370 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.65■■□□□ 1.06
SMARCA1P28370 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SMARCA1P28370 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.65■■□□□ 1.06
SMARCA1P28370 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.65■■□□□ 1.06
SMARCA1P28370 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.65■■□□□ 1.06
SMARCA1P28370 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.65■■□□□ 1.06
SMARCA1P28370 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.65■■□□□ 1.06
SMARCA1P28370 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.65■■□□□ 1.06
SMARCA1P28370 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.65■■□□□ 1.06
SMARCA1P28370 AC006011.2-201ENST00000621313 1158 ntBASIC21.65■■□□□ 1.06
SMARCA1P28370 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms