Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DOAP06340 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
HLA-DOAP06340 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DOAP06340 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DOAP06340 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DOAP06340 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DOAP06340 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DOAP06340 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DOAP06340 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC22.28■■□□□ 1.16
HLA-DOAP06340 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC22.28■■□□□ 1.16
HLA-DOAP06340 USF2-205ENST00000594064 1179 ntTSL 2 BASIC22.28■■□□□ 1.16
HLA-DOAP06340 AC112497.1-201ENST00000624824 639 ntBASIC22.28■■□□□ 1.16
HLA-DOAP06340 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC22.28■■□□□ 1.16
HLA-DOAP06340 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DOAP06340 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
HLA-DOAP06340 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 AL109659.2-201ENST00000606809 1674 ntBASIC22.27■■□□□ 1.16
HLA-DOAP06340 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 PTK2-216ENST00000519881 863 ntTSL 3 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DOAP06340 CLN6-214ENST00000636314 442 ntTSL 3 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC22.27■■□□□ 1.16
HLA-DOAP06340 BID-204ENST00000399767 2129 ntTSL 2 BASIC22.27■■□□□ 1.15
HLA-DOAP06340 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
HLA-DOAP06340 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
HLA-DOAP06340 AL158211.5-201ENST00000623583 2518 ntBASIC22.26■■□□□ 1.15
HLA-DOAP06340 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
HLA-DOAP06340 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC22.26■■□□□ 1.15
HLA-DOAP06340 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC22.26■■□□□ 1.15
HLA-DOAP06340 AC093458.2-201ENST00000623150 629 ntBASIC22.26■■□□□ 1.15
HLA-DOAP06340 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
HLA-DOAP06340 IRX1P1-201ENST00000438849 1838 ntBASIC22.26■■□□□ 1.15
HLA-DOAP06340 UBQLN4P1-201ENST00000461599 1801 ntBASIC22.26■■□□□ 1.15
HLA-DOAP06340 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC22.26■■□□□ 1.15
HLA-DOAP06340 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DOAP06340 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 POLI-202ENST00000406285 2030 ntTSL 2 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 HBZP1-201ENST00000354915 429 ntBASIC22.25■■□□□ 1.15
HLA-DOAP06340 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 AC069148.1-201ENST00000608741 768 ntBASIC22.25■■□□□ 1.15
HLA-DOAP06340 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DOAP06340 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
HLA-DOAP06340 AC141586.3-201ENST00000562166 1838 ntBASIC22.24■■□□□ 1.15
HLA-DOAP06340 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC22.24■■□□□ 1.15
HLA-DOAP06340 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HLA-DOAP06340 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HLA-DOAP06340 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
HLA-DOAP06340 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HLA-DOAP06340 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms