Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RAPGEF3O95398 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
RAPGEF3O95398 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC28.35■■■□□ 2.13
RAPGEF3O95398 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RAPGEF3O95398 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RAPGEF3O95398 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RAPGEF3O95398 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
RAPGEF3O95398 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 VENTXP7-201ENST00000475503 772 ntBASIC28.34■■■□□ 2.13
RAPGEF3O95398 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 PRKN-208ENST00000610470 531 ntTSL 2 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 PRKN-209ENST00000612485 225 ntTSL 5 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RAPGEF3O95398 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RAPGEF3O95398 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
RAPGEF3O95398 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RAPGEF3O95398 PBK-203ENST00000522944 1499 ntTSL 2 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 ME2-216ENST00000639850 2331 ntTSL 5 BASIC28.34■■■□□ 2.13
RAPGEF3O95398 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
RAPGEF3O95398 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
RAPGEF3O95398 POM121L3P-201ENST00000419331 1163 ntBASIC28.33■■■□□ 2.13
RAPGEF3O95398 UPF3AP3-201ENST00000420996 769 ntBASIC28.33■■■□□ 2.13
RAPGEF3O95398 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC28.33■■■□□ 2.13
RAPGEF3O95398 AC098831.1-202ENST00000438821 336 ntBASIC28.33■■■□□ 2.13
RAPGEF3O95398 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
RAPGEF3O95398 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC28.33■■■□□ 2.13
RAPGEF3O95398 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC28.33■■■□□ 2.13
RAPGEF3O95398 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
RAPGEF3O95398 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC28.33■■■□□ 2.13
RAPGEF3O95398 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.12
RAPGEF3O95398 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RAPGEF3O95398 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
RAPGEF3O95398 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RAPGEF3O95398 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RAPGEF3O95398 HOXB1-202ENST00000577092 1414 ntBASIC28.32■■■□□ 2.12
RAPGEF3O95398 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RAPGEF3O95398 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RAPGEF3O95398 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RAPGEF3O95398 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC28.32■■■□□ 2.12
RAPGEF3O95398 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RAPGEF3O95398 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC28.31■■■□□ 2.12
RAPGEF3O95398 RPSAP43-201ENST00000402237 625 ntBASIC28.31■■■□□ 2.12
RAPGEF3O95398 AC132008.2-207ENST00000454517 770 ntBASIC28.31■■■□□ 2.12
RAPGEF3O95398 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC28.31■■■□□ 2.12
RAPGEF3O95398 IRF8-202ENST00000562492 946 ntTSL 3 BASIC28.31■■■□□ 2.12
RAPGEF3O95398 AC010327.4-202ENST00000591484 748 ntBASIC28.31■■■□□ 2.12
RAPGEF3O95398 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
RAPGEF3O95398 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
RAPGEF3O95398 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
RAPGEF3O95398 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
RAPGEF3O95398 TREX1-205ENST00000625293 1783 ntBASIC28.31■■■□□ 2.12
RAPGEF3O95398 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
RAPGEF3O95398 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RAPGEF3O95398 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RAPGEF3O95398 AC008556.1-201ENST00000610908 2040 ntBASIC28.31■■■□□ 2.12
RAPGEF3O95398 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
RAPGEF3O95398 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RAPGEF3O95398 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RAPGEF3O95398 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RAPGEF3O95398 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC28.3■■■□□ 2.12
RAPGEF3O95398 KRT8P7-201ENST00000533003 1432 ntBASIC28.3■■■□□ 2.12
RAPGEF3O95398 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
RAPGEF3O95398 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RAPGEF3O95398 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RAPGEF3O95398 HES2-202ENST00000377836 507 ntTSL 2 BASIC28.3■■■□□ 2.12
RAPGEF3O95398 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC28.3■■■□□ 2.12
RAPGEF3O95398 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RAPGEF3O95398 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC28.3■■■□□ 2.12
RAPGEF3O95398 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC28.3■■■□□ 2.12
RAPGEF3O95398 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RAPGEF3O95398 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RAPGEF3O95398 AC026310.3-201ENST00000625186 2373 ntBASIC28.29■■■□□ 2.12
RAPGEF3O95398 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RAPGEF3O95398 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC28.29■■■□□ 2.12
RAPGEF3O95398 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC28.29■■■□□ 2.12
RAPGEF3O95398 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC28.29■■■□□ 2.12
RAPGEF3O95398 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC28.29■■■□□ 2.12
RAPGEF3O95398 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
RAPGEF3O95398 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
RAPGEF3O95398 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
RAPGEF3O95398 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RAPGEF3O95398 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
RAPGEF3O95398 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC28.29■■■□□ 2.12
RAPGEF3O95398 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms