Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLDN3O15551 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLDN3O15551 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLDN3O15551 AC005521.1-201ENST00000393351 872 ntBASIC20.64■□□□□ 0.89
CLDN3O15551 LIN28AP1-201ENST00000429574 405 ntBASIC20.64■□□□□ 0.89
CLDN3O15551 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLDN3O15551 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.64■□□□□ 0.89
CLDN3O15551 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.64■□□□□ 0.89
CLDN3O15551 AC008622.2-201ENST00000617006 1229 ntBASIC20.64■□□□□ 0.89
CLDN3O15551 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLDN3O15551 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLDN3O15551 BX323043.1-201ENST00000641006 1765 ntBASIC20.64■□□□□ 0.89
CLDN3O15551 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLDN3O15551 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.64■□□□□ 0.89
CLDN3O15551 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.63■□□□□ 0.89
CLDN3O15551 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.63■□□□□ 0.89
CLDN3O15551 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.63■□□□□ 0.89
CLDN3O15551 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN3O15551 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN3O15551 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.63■□□□□ 0.89
CLDN3O15551 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.63■□□□□ 0.89
CLDN3O15551 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.63■□□□□ 0.89
CLDN3O15551 AL020996.1-203ENST00000536896 2307 ntBASIC20.63■□□□□ 0.89
CLDN3O15551 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN3O15551 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.63■□□□□ 0.89
CLDN3O15551 TERF1P1-201ENST00000311003 1181 ntBASIC20.63■□□□□ 0.89
CLDN3O15551 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN3O15551 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.63■□□□□ 0.89
CLDN3O15551 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CLDN3O15551 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.63■□□□□ 0.89
CLDN3O15551 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN3O15551 AL161938.1-201ENST00000569833 2180 ntBASIC20.63■□□□□ 0.89
CLDN3O15551 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.63■□□□□ 0.89
CLDN3O15551 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN3O15551 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN3O15551 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CLDN3O15551 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.63■□□□□ 0.89
CLDN3O15551 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.62■□□□□ 0.89
CLDN3O15551 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
CLDN3O15551 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 RCN1P1-201ENST00000400413 996 ntBASIC20.62■□□□□ 0.89
CLDN3O15551 ATP5G1P1-201ENST00000448724 379 ntBASIC20.62■□□□□ 0.89
CLDN3O15551 KRT18P21-201ENST00000515767 1272 ntBASIC20.62■□□□□ 0.89
CLDN3O15551 AC010203.1-204ENST00000548782 407 ntBASIC20.62■□□□□ 0.89
CLDN3O15551 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CLDN3O15551 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.62■□□□□ 0.89
CLDN3O15551 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.62■□□□□ 0.89
CLDN3O15551 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN3O15551 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.62■□□□□ 0.89
CLDN3O15551 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.62■□□□□ 0.89
CLDN3O15551 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN3O15551 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CLDN3O15551 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.61■□□□□ 0.89
CLDN3O15551 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.61■□□□□ 0.89
CLDN3O15551 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.61■□□□□ 0.89
CLDN3O15551 FAM210CP-201ENST00000445714 574 ntBASIC20.61■□□□□ 0.89
CLDN3O15551 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.61■□□□□ 0.89
CLDN3O15551 AL512604.3-201ENST00000569583 964 ntBASIC20.61■□□□□ 0.89
CLDN3O15551 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN3O15551 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
CLDN3O15551 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.61■□□□□ 0.89
CLDN3O15551 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.61■□□□□ 0.89
CLDN3O15551 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN3O15551 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.61■□□□□ 0.89
CLDN3O15551 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN3O15551 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN3O15551 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN3O15551 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.6■□□□□ 0.89
CLDN3O15551 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CLDN3O15551 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CLDN3O15551 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.6■□□□□ 0.89
CLDN3O15551 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
CLDN3O15551 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.6■□□□□ 0.89
CLDN3O15551 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CLDN3O15551 AC092865.7-201ENST00000641832 219 ntBASIC20.6■□□□□ 0.89
CLDN3O15551 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN3O15551 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CLDN3O15551 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN3O15551 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.6■□□□□ 0.89
CLDN3O15551 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN3O15551 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.6■□□□□ 0.89
CLDN3O15551 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CLDN3O15551 AC073508.3-201ENST00000619697 1419 ntBASIC20.6■□□□□ 0.89
CLDN3O15551 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN3O15551 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.59■□□□□ 0.89
CLDN3O15551 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN3O15551 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN3O15551 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN3O15551 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.59■□□□□ 0.89
CLDN3O15551 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms