Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU6-1130P-201ENST00000365434 107 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 RNU6-449P-201ENST00000383914 107 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 SNORA72-201ENST00000384339 132 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 MIR504-201ENST00000385065 83 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 RNU6-383P-201ENST00000410864 94 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 RNU1-131P-201ENST00000458943 161 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 RNU6-437P-201ENST00000459408 95 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 AC010409.1-201ENST00000487382 476 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 RNU6-1146P-201ENST00000516282 102 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXD9P28356 MIR4438-201ENST00000585271 93 ntBASIC2.11□□□□□ -2.07
HOXD9P28356 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD9P28356 MT-TT-201ENST00000387460 66 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 RNA5SP496-201ENST00000391240 109 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 RN7SKP101-201ENST00000411376 320 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 TMSB4XP3-201ENST00000445144 114 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXD9P28356 AC245047.8-201ENST00000456455 284 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 RPL23AP54-201ENST00000495129 419 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 RNU7-172P-201ENST00000517125 64 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 SNORA31.25-201ENST00000517242 134 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 Y_RNA.783-201ENST00000613546 102 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 U2.22-201ENST00000636441 106 ntBASIC2.1□□□□□ -2.07
HOXD9P28356 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD9P28356 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD9P28356 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.07
HOXD9P28356 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.07
HOXD9P28356 RNU4-13P-201ENST00000364019 141 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 SNORD116-18-201ENST00000383961 92 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 Y_RNA.400-201ENST00000383963 111 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 AL606845.1-201ENST00000404881 255 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 RNU4-43P-201ENST00000410628 137 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 AC011406.1-201ENST00000512440 370 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 RNU6-1007P-201ENST00000516586 107 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXD9P28356 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
HOXD9P28356 AL021707.8-201ENST00000609428 183 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 AL353149.1-201ENST00000610667 244 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 MIR7843-201ENST00000622274 79 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 MIR203B-201ENST00000636080 86 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 AC132825.6-201ENST00000638861 357 ntBASIC2.09□□□□□ -2.07
HOXD9P28356 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
HOXD9P28356 AC131280.1-202ENST00000624067 4211 ntBASIC2.09□□□□□ -2.08
HOXD9P28356 ZNF355P-201ENST00000427301 3216 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 snoU2-30.2-201ENST00000362805 70 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 SNORD115-3-201ENST00000363100 82 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXD9P28356 RNU6-376P-201ENST00000384731 106 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 HMGN2P39-201ENST00000398005 273 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 MIR1253-201ENST00000408273 105 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 HMGN2P34-201ENST00000437647 269 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 AC245102.2-201ENST00000448956 180 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 AC107027.2-201ENST00000512197 115 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXD9P28356 MIR4529-201ENST00000578110 78 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 MIR6895-201ENST00000613497 78 ntBASIC2.08□□□□□ -2.08
HOXD9P28356 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXD9P28356 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXD9P28356 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
HOXD9P28356 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXD9P28356 RNU6-728P-201ENST00000365375 104 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 RNU6-81P-201ENST00000365608 104 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 SNORA19-201ENST00000384737 128 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 AL512604.1-201ENST00000404812 257 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXD9P28356 RPS4XP11-201ENST00000446897 772 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 RNU7-99P-201ENST00000516271 62 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 RNU7-128P-201ENST00000517247 62 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXD9P28356 AC007229.1-201ENST00000590455 412 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 AC078899.2-201ENST00000595282 212 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 AP001485.1-201ENST00000604799 199 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXD9P28356 Y_RNA.778-201ENST00000620203 90 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 MIR338-201ENST00000636369 67 ntBASIC2.07□□□□□ -2.08
HOXD9P28356 Y_RNA.215-201ENST00000364204 112 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 SNORD114-6-201ENST00000364393 72 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 RNA5SP160-201ENST00000364866 120 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 RNU6-160P-201ENST00000384591 107 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 MIR518A2-201ENST00000384966 87 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 RNU11-5P-201ENST00000391216 129 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 MIR1262-201ENST00000408276 93 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 AC055731.1-201ENST00000474387 401 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXD9P28356 RNU6-561P-201ENST00000516222 102 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 RNU2-19P-201ENST00000517288 84 ntBASIC2.06□□□□□ -2.08
HOXD9P28356 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXD9P28356 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
HOXD9P28356 Y_RNA.203-201ENST00000364106 102 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 RNU4-41P-201ENST00000364426 143 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 Y_RNA.337-201ENST00000365312 102 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 RNU6-643P-201ENST00000384018 107 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 RNU6-136P-201ENST00000384663 107 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 RNU6-417P-201ENST00000384712 107 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 SNORA80E-201ENST00000384744 137 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 MIR15B-201ENST00000385045 98 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 MIR520G-201ENST00000385064 90 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 MIR29C-201ENST00000385231 88 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 AL117342.1-201ENST00000404861 406 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 185.3 ms