Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RPL39P34-201ENST00000477141 156 ntBASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 CEP170P1-201ENST00000502249 4587 ntBASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 RNU6-23P-201ENST00000363283 107 ntBASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 SNORA63.5-201ENST00000363548 123 ntBASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 MIR181B1-201ENST00000385240 110 ntBASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 AL590004.2-201ENST00000404787 371 ntBASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 RN7SKP209-201ENST00000516888 304 ntBASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 SNORA28-201ENST00000606769 126 ntBASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 AP003355.3-201ENST00000623465 114 ntBASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIMD1Q9UGP4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 AC245060.5-201ENST00000610778 3293 ntBASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 Y_RNA.440-201ENST00000384120 114 ntBASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 Y_RNA.544-201ENST00000384650 113 ntBASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 U8.17-201ENST00000391292 132 ntBASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 AL627390.1-201ENST00000396055 340 ntBASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 AL109933.2-201ENST00000452651 260 ntBASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 RNA5SP341-201ENST00000516261 117 ntBASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 SNORA18.7-201ENST00000516910 131 ntBASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 AP003484.1-201ENST00000530974 250 ntBASIC3.62□□□□□ -1.83
LIMD1Q9UGP4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIMD1Q9UGP4 RNU6-414P-201ENST00000363705 104 ntBASIC3.61□□□□□ -1.83
LIMD1Q9UGP4 Y_RNA.362-201ENST00000365518 110 ntBASIC3.61□□□□□ -1.83
LIMD1Q9UGP4 SNORD38C-201ENST00000384381 69 ntBASIC3.61□□□□□ -1.83
LIMD1Q9UGP4 MIR3169-201ENST00000578032 83 ntBASIC3.61□□□□□ -1.83
LIMD1Q9UGP4 AP001318.4-201ENST00000616637 121 ntBASIC3.61□□□□□ -1.83
LIMD1Q9UGP4 AL035470.1-201ENST00000622571 220 ntBASIC3.61□□□□□ -1.83
LIMD1Q9UGP4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIMD1Q9UGP4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 AC008264.2-201ENST00000610193 3731 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 SNORA80A-201ENST00000363922 136 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 RNU6-283P-201ENST00000364788 107 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 Y_RNA.298-201ENST00000364960 107 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 Y_RNA.348-201ENST00000365403 103 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 MIR29C-201ENST00000385231 88 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 AL445687.1-201ENST00000439946 251 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 RN7SL594P-201ENST00000470590 287 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 SNORD36C-201ENST00000516733 66 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 MIR5004-201ENST00000579078 107 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 AC005786.1-201ENST00000588553 154 ntBASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMD1Q9UGP4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 Y_RNA.351-201ENST00000365436 96 ntBASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 SNORA40.13-201ENST00000516379 120 ntBASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 MIR4644-201ENST00000579929 84 ntBASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 MIR3683-201ENST00000580847 82 ntBASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 AC015726.2-201ENST00000620112 122 ntBASIC3.59□□□□□ -1.83
LIMD1Q9UGP4 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.59□□□□□ -1.84
LIMD1Q9UGP4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.84
LIMD1Q9UGP4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
LIMD1Q9UGP4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 RNU6-905P-201ENST00000384434 107 ntBASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 Z98941.1-201ENST00000407764 100 ntBASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 AC069257.2-201ENST00000441819 155 ntBASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 RNU7-164P-201ENST00000459221 62 ntBASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 MIR4276-201ENST00000584832 70 ntBASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 AC093908.1-201ENST00000623125 8092 ntBASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.58□□□□□ -1.84
LIMD1Q9UGP4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 SUMO2P16-201ENST00000519475 264 ntBASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 AC024614.2-201ENST00000577584 372 ntBASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 MIR5009-201ENST00000578736 100 ntBASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 MIR3163-201ENST00000581592 73 ntBASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 AL356274.2-201ENST00000624379 3752 ntBASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 AC027279.3-201ENST00000625055 122 ntBASIC3.57□□□□□ -1.84
LIMD1Q9UGP4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIMD1Q9UGP4 MIR627-201ENST00000384979 97 ntBASIC3.56□□□□□ -1.84
LIMD1Q9UGP4 RPS29P31-201ENST00000446147 164 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms