Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNU6-383P-201ENST00000410864 94 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.82□□□□□ -1.96
COL6A1P12109 ATP5EP1-201ENST00000510257 156 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 RNA5SP20-201ENST00000515976 84 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 RNA5SP272-201ENST00000516095 111 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 SNORA48.11-201ENST00000517015 89 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 AC112693.2-201ENST00000556538 232 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 AC127455.1-201ENST00000565496 145 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 MIR4635-201ENST00000583759 79 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 POLR3GP1-201ENST00000594073 261 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 AC005972.2-201ENST00000604690 348 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 MIR3658-201ENST00000636291 56 ntBASIC2.82□□□□□ -1.96
COL6A1P12109 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.82□□□□□ -1.96
COL6A1P12109 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL6A1P12109 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
COL6A1P12109 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL6A1P12109 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL6A1P12109 SNORA3A-201ENST00000364113 130 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 MIR539-201ENST00000365690 78 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 SNORD116-13-201ENST00000384408 92 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 RNU6-1235P-201ENST00000384559 107 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 SNORA22C-201ENST00000384614 134 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 AL359511.1-201ENST00000402970 211 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 RPS12P2-201ENST00000439728 269 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.81□□□□□ -1.96
COL6A1P12109 AC016925.1-201ENST00000458303 298 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 RNU6-498P-201ENST00000459468 107 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 RPL23AP54-201ENST00000495129 419 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 RNU2-34P-201ENST00000516534 121 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.81□□□□□ -1.96
COL6A1P12109 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.81□□□□□ -1.96
COL6A1P12109 MIR3646-201ENST00000578301 84 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 AC078899.2-201ENST00000595282 212 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 AL365222.1-201ENST00000614661 98 ntBASIC2.81□□□□□ -1.96
COL6A1P12109 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
COL6A1P12109 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL6A1P12109 AL356292.1-201ENST00000283110 373 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 RNU1-72P-201ENST00000362976 153 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 Y_RNA.521-201ENST00000384560 114 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 SNORA79-201ENST00000408376 140 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 RNU6-735P-201ENST00000410612 107 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 AC016717.1-201ENST00000448918 286 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 AC234781.5-201ENST00000508429 271 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 AC027419.1-201ENST00000522976 328 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 CYCSP26-201ENST00000534107 320 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 AC010297.1-201ENST00000623948 149 ntBASIC2.8□□□□□ -1.96
COL6A1P12109 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL6A1P12109 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
COL6A1P12109 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
COL6A1P12109 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.79□□□□□ -1.96
COL6A1P12109 RNU4-13P-201ENST00000364019 141 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 AL512604.1-201ENST00000404812 257 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 RNU4-43P-201ENST00000410628 137 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 Y_RNA.629-201ENST00000411368 105 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 MTND4LP9-201ENST00000427694 174 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 RPS27P1-201ENST00000450552 247 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 RNU6-437P-201ENST00000459408 95 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 AC025647.1-201ENST00000517879 253 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 AC026271.5-201ENST00000577873 130 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 TUG1_4.1-201ENST00000619464 181 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 MIR6844-201ENST00000637122 62 ntBASIC2.79□□□□□ -1.96
COL6A1P12109 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
COL6A1P12109 RNU6-1240P-201ENST00000365155 104 ntBASIC2.78□□□□□ -1.96
COL6A1P12109 RNU1-148P-201ENST00000384472 162 ntBASIC2.78□□□□□ -1.96
COL6A1P12109 RNA5SP496-201ENST00000391240 109 ntBASIC2.78□□□□□ -1.96
COL6A1P12109 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
COL6A1P12109 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.78□□□□□ -1.96
COL6A1P12109 SNORA4.4-201ENST00000515921 135 ntBASIC2.78□□□□□ -1.96
COL6A1P12109 AC023043.3-201ENST00000593113 385 ntBASIC2.78□□□□□ -1.96
COL6A1P12109 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL6A1P12109 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL6A1P12109 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.97
COL6A1P12109 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
COL6A1P12109 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
COL6A1P12109 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 RNU6-674P-201ENST00000363831 107 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 RNU4-41P-201ENST00000364426 143 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 Y_RNA.393-201ENST00000383936 102 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 SNORA6-201ENST00000384033 151 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 RNU6-418P-201ENST00000384035 107 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 Y_RNA.420-201ENST00000384043 110 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 MIR181B1-201ENST00000385240 110 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL6A1P12109 HMGN2P23-201ENST00000456759 269 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 RPS27P22-201ENST00000478056 241 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 RNU6-561P-201ENST00000516222 102 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 RNU6-971P-201ENST00000516920 106 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.77□□□□□ -1.97
COL6A1P12109 AC012640.5-201ENST00000623897 319 ntBASIC2.77□□□□□ -1.97
COL6A1P12109 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL6A1P12109 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.76□□□□□ -1.97
COL6A1P12109 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.76□□□□□ -1.97
COL6A1P12109 RNU6-546P-201ENST00000383991 107 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 SNORA20-201ENST00000384662 132 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 MIR95-201ENST00000385072 81 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 SNORD23.1-201ENST00000408212 104 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 EDDM3CP-201ENST00000415977 425 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.76□□□□□ -1.97
COL6A1P12109 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms