Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 AC026271.5-201ENST00000577873 130 ntBASIC3.33□□□□□ -1.88
PCDHGA11Q9Y5H2 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.33□□□□□ -1.88
PCDHGA11Q9Y5H2 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PCDHGA11Q9Y5H2 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 RNA5SP493-201ENST00000364115 91 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 MIR1302-5-201ENST00000408164 150 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 HMGN2P32-201ENST00000444648 269 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU6-240P-201ENST00000516098 97 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 SNORD45.4-201ENST00000516629 73 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 MIR6798-201ENST00000612887 67 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 AC009093.8-201ENST00000641769 292 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 ZNF720P1-201ENST00000562403 1939 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 AC017071.1-201ENST00000564407 2204 ntBASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
PCDHGA11Q9Y5H2 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 Y_RNA.37-201ENST00000362606 108 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 Y_RNA.49-201ENST00000362714 112 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU6-23P-201ENST00000363283 107 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 RNY4P6-201ENST00000363667 96 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU6-268P-201ENST00000364174 107 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 Y_RNA.213-201ENST00000364178 111 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU6-690P-201ENST00000365242 106 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 MIR554-201ENST00000384874 96 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 AC093578.1-201ENST00000415219 368 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 AL445687.1-201ENST00000439946 251 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 AL109933.2-201ENST00000452651 260 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 snoU13.22-201ENST00000459428 104 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 TRBV12-1-201ENST00000479785 344 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU7-25P-201ENST00000516544 62 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 MIR4778-201ENST00000577635 80 ntBASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PCDHGA11Q9Y5H2 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 AL589743.1-201ENST00000551932 2712 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 RNA5SP124-201ENST00000362739 110 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 Y_RNA.198-201ENST00000364013 98 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 Y_RNA.547-201ENST00000384654 119 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 RPL21P3-201ENST00000395517 478 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 AC245047.3-201ENST00000429428 127 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 AL445646.1-201ENST00000431784 216 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 AL133547.1-201ENST00000448546 220 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 AL049873.1-201ENST00000480540 376 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 AC104027.1-201ENST00000521887 300 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 AC008264.2-201ENST00000610193 3731 ntBASIC3.3□□□□□ -1.88
PCDHGA11Q9Y5H2 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 SNORA80E-201ENST00000384744 137 ntBASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU6-554P-201ENST00000410466 106 ntBASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 MIR376A2-201ENST00000636782 80 ntBASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 MIR4679-1-201ENST00000637619 75 ntBASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PCDHGA11Q9Y5H2 AP006437.1-201ENST00000641440 3685 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU1-133P-201ENST00000364867 167 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU6-1113P-201ENST00000384348 107 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 PTMAP2-201ENST00000397627 327 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 AC087499.4-201ENST00000448505 178 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 HMGN1P18-201ENST00000457642 277 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU7-80P-201ENST00000459562 61 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 RNU1-45P-201ENST00000517191 141 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 AC092435.3-201ENST00000565538 3654 ntBASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PCDHGA11Q9Y5H2 MIR148B-201ENST00000362252 99 ntBASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 Y_RNA.454-201ENST00000384224 113 ntBASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 MIR218-2-201ENST00000385006 110 ntBASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 SNRPGP14-201ENST00000435400 219 ntBASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 SNORA64.4-201ENST00000516632 81 ntBASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 SNORA18.7-201ENST00000516910 131 ntBASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 MIR3169-201ENST00000578032 83 ntBASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 MIR5582-201ENST00000579697 68 ntBASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 SNORA28-201ENST00000606769 126 ntBASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.27□□□□□ -1.89
PCDHGA11Q9Y5H2 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms