Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AP006437.1-201ENST00000641440 3685 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 RNU6-144P-201ENST00000383951 107 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 Y_RNA.525-201ENST00000384570 113 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 MIR29C-201ENST00000385231 88 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 RNU4-43P-201ENST00000410628 137 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 RNU2-52P-201ENST00000410680 190 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 RNU6-383P-201ENST00000410864 94 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 RNA5SP184-201ENST00000411071 108 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 RN7SKP43-201ENST00000516173 320 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 MIR4319-201ENST00000577285 85 ntBASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CLIP3Q96DZ5 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 SNORD114-7-201ENST00000362520 77 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 RNU6-975P-201ENST00000384296 105 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 RNU6-429P-201ENST00000384582 108 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 SNORD37.2-201ENST00000391075 66 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 RNU6-588P-201ENST00000410281 105 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 RNA5SP270-201ENST00000411361 118 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 RNU7-107P-201ENST00000459121 61 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 RPL23AP94-201ENST00000512518 302 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 RNU7-115P-201ENST00000516433 55 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 RNU2-34P-201ENST00000516534 121 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 MIR4724-201ENST00000579485 89 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 AL391516.1-201ENST00000554380 2449 ntBASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
CLIP3Q96DZ5 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 SNORA67.1-201ENST00000364749 141 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 RNU6-728P-201ENST00000365375 104 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 Y_RNA.393-201ENST00000383936 102 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 RNU6-160P-201ENST00000384591 107 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 MIR196B-201ENST00000384852 84 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 AL355796.1-201ENST00000406706 323 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 MIR1185-2-201ENST00000408687 86 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 MTCO1P44-201ENST00000441935 243 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 RPL23AP7-203ENST00000449021 469 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 AC011753.1-201ENST00000451001 220 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 HSPE1P13-201ENST00000451143 297 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 RNU7-57P-201ENST00000459540 60 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 AC010531.2-201ENST00000465012 153 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 AC117454.1-201ENST00000491120 168 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 SNORA70.12-201ENST00000516084 153 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 RNU6-948P-201ENST00000516374 107 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 MIR5194-201ENST00000582634 120 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 AC011603.4-201ENST00000611325 277 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 MIR548AY-201ENST00000617669 107 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 MIR6844-201ENST00000637122 62 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 CENPCP1-201ENST00000533085 2578 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 ZNF271P-202ENST00000465539 1970 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CLIP3Q96DZ5 AC009487.4-201ENST00000624969 3585 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 SNORA3A-201ENST00000364113 130 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 SNORD116-13-201ENST00000384408 92 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 MIR512-1-201ENST00000384913 84 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 RNY4P18-201ENST00000391107 89 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 SNORA36B-201ENST00000410438 131 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 AC063976.3-201ENST00000426849 329 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 AL357134.1-201ENST00000445848 426 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 SRIP1-201ENST00000489235 288 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 AP001328.1-201ENST00000528550 176 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 U7.2-201ENST00000607576 63 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 AC090115.4-201ENST00000609970 188 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 AL136360.1-201ENST00000503377 1900 ntBASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CLIP3Q96DZ5 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
CLIP3Q96DZ5 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.98
CLIP3Q96DZ5 MIR340-201ENST00000362125 95 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 MIR367-201ENST00000362299 68 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 RNU6-1298P-201ENST00000362456 101 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 SNORD115-3-201ENST00000363100 82 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 RNU6-1082P-201ENST00000364574 107 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 RNU6-1056P-201ENST00000383996 107 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 RNU6-418P-201ENST00000384035 107 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 RNY3P5-201ENST00000384127 102 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 RNU6-1235P-201ENST00000384559 107 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 RPS27P1-201ENST00000450552 247 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 SNORD109B-201ENST00000458961 67 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 SNORD109A-201ENST00000459128 67 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 RNU6-498P-201ENST00000459468 107 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms