Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 GS1-279B7.1-204ENST00000641809 378 ntBASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 RNU4-41P-201ENST00000364426 143 ntBASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 Y_RNA.274-201ENST00000364714 101 ntBASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 AC063976.3-201ENST00000426849 329 ntBASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 AL049830.1-201ENST00000468034 425 ntBASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 SNORA81.3-201ENST00000517283 198 ntBASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 MIR4672-201ENST00000583126 81 ntBASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 AC091178.2-201ENST00000584401 117 ntBASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 AC007318.2-201ENST00000620999 243 ntBASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
TRAIPQ9BWF2 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 SNORA5B-201ENST00000363786 132 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 Y_RNA.203-201ENST00000364106 102 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 RNU6-923P-201ENST00000364753 107 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 RNU6-493P-201ENST00000391321 108 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 RN7SKP58-201ENST00000411010 305 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 AC022018.1-201ENST00000430685 241 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 UBE2DNL-203ENST00000474922 222 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 RNA5SP356-201ENST00000515972 94 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 RNU6-1007P-201ENST00000516586 107 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 AC100767.1-201ENST00000528178 123 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 AC021269.2-201ENST00000532318 330 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 MIR3162-201ENST00000581818 82 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 AC011921.3-201ENST00000605540 361 ntBASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
TRAIPQ9BWF2 Y_RNA.24-201ENST00000362508 103 ntBASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 RNU6-674P-201ENST00000363831 107 ntBASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 Y_RNA.265-201ENST00000364677 108 ntBASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 SNORA9.2-201ENST00000365361 133 ntBASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 Y_RNA.785-201ENST00000384290 109 ntBASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 RNA5SP274-201ENST00000410484 108 ntBASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 BMS1P22-201ENST00000414726 313 ntBASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 Z98949.2-201ENST00000440996 144 ntBASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 AC055731.1-201ENST00000474387 401 ntBASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
TRAIPQ9BWF2 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 RNU6-1080P-201ENST00000383982 107 ntBASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 MIR626-201ENST00000385032 94 ntBASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 RNA5SP109-201ENST00000391010 116 ntBASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 AC105272.1-201ENST00000438604 198 ntBASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 RNA5SP481-201ENST00000516814 122 ntBASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 GTF3AP2-201ENST00000557014 266 ntBASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 AL929325.1-201ENST00000603096 117 ntBASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 SNORA28-201ENST00000606769 126 ntBASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 FO624990.1-201ENST00000636373 85 ntBASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
TRAIPQ9BWF2 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 RNU6-653P-201ENST00000363074 106 ntBASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 RNU6-969P-201ENST00000383900 105 ntBASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 RN7SKP164-201ENST00000516138 266 ntBASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 RNY3P16-201ENST00000516338 101 ntBASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 RNU7-28P-201ENST00000516759 62 ntBASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 AP002392.1-201ENST00000537692 208 ntBASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 SUB1P4-201ENST00000566062 339 ntBASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 CTSLP2-204ENST00000629029 392 ntBASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
TRAIPQ9BWF2 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 AC008555.8-201ENST00000623602 2168 ntBASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 RNU4-10P-201ENST00000364383 140 ntBASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 RNA5SP496-201ENST00000391240 109 ntBASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 RN7SKP200-201ENST00000410564 320 ntBASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 RNU6-383P-201ENST00000410864 94 ntBASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 AC245047.4-201ENST00000433189 144 ntBASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 RN7SL633P-201ENST00000488974 297 ntBASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 SCGB1D5P-201ENST00000515134 247 ntBASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
TRAIPQ9BWF2 ZNF702P-202ENST00000434269 1966 ntBASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 RNU4-70P-201ENST00000384579 139 ntBASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 COX6CP10-201ENST00000416832 224 ntBASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 AP004217.1-201ENST00000480579 346 ntBASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 RN7SKP132-201ENST00000516001 208 ntBASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 HMSD-204ENST00000526932 162 ntTSL 3 BASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 MIR3605-201ENST00000583214 100 ntBASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 AC022217.4-201ENST00000604389 163 ntBASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TRAIPQ9BWF2 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
TRAIPQ9BWF2 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms