Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.83□□□□□ -1.8
HLA-CQ95604 MIR5680-201ENST00000577577 84 ntBASIC3.83□□□□□ -1.8
HLA-CQ95604 MIR3199-1-201ENST00000582434 88 ntBASIC3.83□□□□□ -1.8
HLA-CQ95604 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-CQ95604 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-CQ95604 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HLA-CQ95604 RNA5SP432-201ENST00000362480 116 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 SNORA1B-201ENST00000362535 133 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 Y_RNA.440-201ENST00000384120 114 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 MIR93-201ENST00000385024 80 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HLA-CQ95604 AL445646.1-201ENST00000431784 216 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.82□□□□□ -1.8
HLA-CQ95604 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.82□□□□□ -1.8
HLA-CQ95604 MIR4305-201ENST00000583252 102 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.82□□□□□ -1.8
HLA-CQ95604 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 MIR6715A-201ENST00000615929 79 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.82□□□□□ -1.8
HLA-CQ95604 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HLA-CQ95604 CEP170P1-201ENST00000502249 4587 ntBASIC3.82□□□□□ -1.8
HLA-CQ95604 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HLA-CQ95604 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HLA-CQ95604 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HLA-CQ95604 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HLA-CQ95604 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HLA-CQ95604 RNU1-23P-201ENST00000363361 144 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 Y_RNA.265-201ENST00000364677 108 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 RNA5SP126-201ENST00000365092 109 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 Y_RNA.466-201ENST00000384294 113 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 Y_RNA.547-201ENST00000384654 119 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 MIR3074-201ENST00000384885 81 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 MIR561-201ENST00000385216 97 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 RNA5SP424-201ENST00000390988 115 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 RNA5SP467-201ENST00000391274 118 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 AL627390.1-201ENST00000396055 340 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.81□□□□□ -1.8
HLA-CQ95604 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.81□□□□□ -1.8
HLA-CQ95604 SNRPGP14-201ENST00000435400 219 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 AC107297.1-201ENST00000459991 176 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 RNU7-25P-201ENST00000516544 62 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.81□□□□□ -1.8
HLA-CQ95604 AP000553.6-201ENST00000641242 118 ntBASIC3.81□□□□□ -1.8
HLA-CQ95604 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HLA-CQ95604 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
HLA-CQ95604 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.8□□□□□ -1.8
HLA-CQ95604 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.8□□□□□ -1.8
HLA-CQ95604 Y_RNA.10-201ENST00000362371 110 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 RNU6-268P-201ENST00000364174 107 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 Y_RNA.219-201ENST00000364232 113 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 SNORA68.1-201ENST00000364537 132 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 RNY1P7-201ENST00000384743 110 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 MIR218-1-201ENST00000384999 110 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 MT-TI-201ENST00000387365 69 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 RNA5SP323-201ENST00000391094 133 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 SNORA19.1-201ENST00000410656 129 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 SRIP3-201ENST00000413200 219 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 AC107083.1-201ENST00000439643 279 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 RNU7-123P-201ENST00000515911 60 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 SNORA70.18-201ENST00000516696 98 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 MIR1245B-201ENST00000636115 69 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 MIR7515-201ENST00000637837 67 ntBASIC3.8□□□□□ -1.8
HLA-CQ95604 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HLA-CQ95604 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.8□□□□□ -1.8
HLA-CQ95604 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
HLA-CQ95604 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HLA-CQ95604 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HLA-CQ95604 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HLA-CQ95604 RPL21P3-201ENST00000395517 478 ntBASIC3.79□□□□□ -1.8
HLA-CQ95604 RPL39P25-201ENST00000449384 154 ntBASIC3.79□□□□□ -1.8
HLA-CQ95604 RNA5SP341-201ENST00000516261 117 ntBASIC3.79□□□□□ -1.8
HLA-CQ95604 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.79□□□□□ -1.8
HLA-CQ95604 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.79□□□□□ -1.8
HLA-CQ95604 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
HLA-CQ95604 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.79□□□□□ -1.8
HLA-CQ95604 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.79□□□□□ -1.8
HLA-CQ95604 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
HLA-CQ95604 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HLA-CQ95604 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HLA-CQ95604 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HLA-CQ95604 LINC02471-203ENST00000641941 4752 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HLA-CQ95604 Y_RNA.99-201ENST00000363138 105 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 SNORA63D-201ENST00000364359 132 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 Y_RNA.342-201ENST00000365352 113 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 SNORD17-201ENST00000390930 237 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 RNA5SP39-201ENST00000411245 120 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 CST2P1-201ENST00000425770 87 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.78□□□□□ -1.8
HLA-CQ95604 RNU6-1041P-201ENST00000516254 102 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 RNU7-28P-201ENST00000516759 62 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 DEFB131E-201ENST00000532329 154 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 MIR5004-201ENST00000579078 107 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 AC006023.1-201ENST00000603944 259 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 MIR7154-201ENST00000620673 73 ntBASIC3.78□□□□□ -1.8
HLA-CQ95604 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.78□□□□□ -1.8
HLA-CQ95604 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HLA-CQ95604 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
HLA-CQ95604 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 135.9 ms