Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
NKX2-3Q8TAU0 RNU7-23P-201ENST00000459465 62 ntBASIC4.17□□□□□ -1.74
NKX2-3Q8TAU0 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.17□□□□□ -1.74
NKX2-3Q8TAU0 MIR4777-201ENST00000583710 86 ntBASIC4.17□□□□□ -1.74
NKX2-3Q8TAU0 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NKX2-3Q8TAU0 CEP170P1-201ENST00000502249 4587 ntBASIC4.17□□□□□ -1.74
NKX2-3Q8TAU0 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
NKX2-3Q8TAU0 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 RNU6-661P-201ENST00000362409 107 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 SNORD31B-201ENST00000364977 69 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 Y_RNA.360-201ENST00000365512 102 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 SNORA18-201ENST00000384416 132 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 AC016909.1-201ENST00000415916 166 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 COTL1P1-201ENST00000422309 375 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 snoU13.28-201ENST00000459235 104 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 RNU7-70P-201ENST00000516941 66 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 RNU6-1096P-201ENST00000517089 102 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 AC079598.5-201ENST00000547460 117 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 AC006160.2-201ENST00000637708 154 ntBASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
NKX2-3Q8TAU0 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.15□□□□□ -1.74
NKX2-3Q8TAU0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
NKX2-3Q8TAU0 RNU1-72P-201ENST00000362976 153 ntBASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 RNU6-733P-201ENST00000410759 104 ntBASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 RNU2-34P-201ENST00000516534 121 ntBASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 Y_RNA.705-201ENST00000516862 110 ntBASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 AC026333.2-201ENST00000542164 106 ntBASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 MIR4738-201ENST00000579134 87 ntBASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 MIR4668-201ENST00000582284 70 ntBASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 AC087741.2-201ENST00000619415 172 ntBASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 AL365361.1-201ENST00000566942 3481 ntBASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.15□□□□□ -1.75
NKX2-3Q8TAU0 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 AC010889.1-201ENST00000566193 2666 ntBASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 SNORD115-19-201ENST00000363098 82 ntBASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 SNORD115-18-201ENST00000363293 82 ntBASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 SNORD115-17-201ENST00000364612 82 ntBASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 RNU6-652P-201ENST00000365488 107 ntBASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 MIR1294-201ENST00000408503 142 ntBASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 RNU6-579P-201ENST00000516879 102 ntBASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 IGKV2-26-201ENST00000518305 343 ntBASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 MIR3618-201ENST00000580330 88 ntBASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX2-3Q8TAU0 AL356274.2-201ENST00000624379 3752 ntBASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 Y_RNA.155-201ENST00000363632 101 ntBASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 SNORD45B-201ENST00000364617 72 ntBASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 RNU6-409P-201ENST00000384114 104 ntBASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 RNU6-887P-201ENST00000410660 100 ntBASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 AC017083.1-201ENST00000428093 483 ntBASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 RNU2-35P-201ENST00000516446 142 ntBASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 MIR7112-201ENST00000616126 65 ntBASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.13□□□□□ -1.75
NKX2-3Q8TAU0 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 RNU6-198P-201ENST00000384258 104 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 RNU6-301P-201ENST00000384277 107 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 Y_RNA.607-201ENST00000410597 98 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 RPS29P31-201ENST00000446147 164 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 AC112771.1-201ENST00000463581 102 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 S100A11P2-201ENST00000467589 312 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 RNU6-1006P-201ENST00000516998 103 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 AP000867.2-201ENST00000532468 320 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 MIR4778-201ENST00000577635 80 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 MIR4644-201ENST00000579929 84 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 MIR548Z-201ENST00000584743 97 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
NKX2-3Q8TAU0 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
NKX2-3Q8TAU0 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms