Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSX1P28360 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSX1P28360 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.41□□□□□ -1.86
MSX1P28360 AL021368.2-201ENST00000606125 5352 ntBASIC3.41□□□□□ -1.86
MSX1P28360 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.4□□□□□ -1.86
MSX1P28360 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
MSX1P28360 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.4□□□□□ -1.87
MSX1P28360 MIR218-1-201ENST00000384999 110 ntBASIC3.4□□□□□ -1.87
MSX1P28360 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
MSX1P28360 RNU6-1328P-201ENST00000410938 106 ntBASIC3.4□□□□□ -1.87
MSX1P28360 RNU7-164P-201ENST00000459221 62 ntBASIC3.4□□□□□ -1.87
MSX1P28360 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.4□□□□□ -1.87
MSX1P28360 AC006441.5-201ENST00000612680 209 ntBASIC3.4□□□□□ -1.87
MSX1P28360 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.4□□□□□ -1.87
MSX1P28360 AC110079.1-202ENST00000635213 138 ntBASIC3.4□□□□□ -1.87
MSX1P28360 MIR7157-201ENST00000635801 60 ntBASIC3.4□□□□□ -1.87
MSX1P28360 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
MSX1P28360 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.39□□□□□ -1.87
MSX1P28360 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
MSX1P28360 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
MSX1P28360 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
MSX1P28360 Y_RNA.265-201ENST00000364677 108 ntBASIC3.39□□□□□ -1.87
MSX1P28360 RNY1P6-201ENST00000384193 109 ntBASIC3.39□□□□□ -1.87
MSX1P28360 RNU6-1152P-201ENST00000384576 107 ntBASIC3.39□□□□□ -1.87
MSX1P28360 RNA5SP467-201ENST00000391274 118 ntBASIC3.39□□□□□ -1.87
MSX1P28360 AC099677.2-201ENST00000436385 175 ntBASIC3.39□□□□□ -1.87
MSX1P28360 AC107297.1-201ENST00000459991 176 ntBASIC3.39□□□□□ -1.87
MSX1P28360 AC010401.1-201ENST00000463867 348 ntBASIC3.39□□□□□ -1.87
MSX1P28360 AL049830.1-201ENST00000468034 425 ntBASIC3.39□□□□□ -1.87
MSX1P28360 AC104619.4-201ENST00000510773 249 ntBASIC3.39□□□□□ -1.87
MSX1P28360 RN7SKP18-201ENST00000516005 275 ntBASIC3.39□□□□□ -1.87
MSX1P28360 RNA5SP208-201ENST00000516156 78 ntBASIC3.39□□□□□ -1.87
MSX1P28360 AP000553.6-201ENST00000641242 118 ntBASIC3.39□□□□□ -1.87
MSX1P28360 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.39□□□□□ -1.87
MSX1P28360 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
MSX1P28360 CEP170P1-201ENST00000502249 4587 ntBASIC3.39□□□□□ -1.87
MSX1P28360 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX1P28360 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX1P28360 Y_RNA.37-201ENST00000362606 108 ntBASIC3.38□□□□□ -1.87
MSX1P28360 RNU6-592P-201ENST00000411333 103 ntBASIC3.38□□□□□ -1.87
MSX1P28360 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.38□□□□□ -1.87
MSX1P28360 RN7SL293P-201ENST00000481765 281 ntBASIC3.38□□□□□ -1.87
MSX1P28360 MIR3163-201ENST00000581592 73 ntBASIC3.38□□□□□ -1.87
MSX1P28360 SNORA50A-202ENST00000629536 136 ntBASIC3.38□□□□□ -1.87
MSX1P28360 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
MSX1P28360 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
MSX1P28360 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX1P28360 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.38□□□□□ -1.87
MSX1P28360 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
MSX1P28360 Y_RNA.107-201ENST00000363190 121 ntBASIC3.37□□□□□ -1.87
MSX1P28360 RNU1-23P-201ENST00000363361 144 ntBASIC3.37□□□□□ -1.87
MSX1P28360 SNORD115-28-201ENST00000363931 81 ntBASIC3.37□□□□□ -1.87
MSX1P28360 SNORA63D-201ENST00000364359 132 ntBASIC3.37□□□□□ -1.87
MSX1P28360 RNU1-133P-201ENST00000364867 167 ntBASIC3.37□□□□□ -1.87
MSX1P28360 Y_RNA.342-201ENST00000365352 113 ntBASIC3.37□□□□□ -1.87
MSX1P28360 RNU6-442P-201ENST00000383968 104 ntBASIC3.37□□□□□ -1.87
MSX1P28360 RNU6-1104P-201ENST00000384723 104 ntBASIC3.37□□□□□ -1.87
MSX1P28360 MIR95-201ENST00000385072 81 ntBASIC3.37□□□□□ -1.87
MSX1P28360 MIR591-201ENST00000385290 95 ntBASIC3.37□□□□□ -1.87
MSX1P28360 FO393413.1-201ENST00000402892 195 ntBASIC3.37□□□□□ -1.87
MSX1P28360 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.37□□□□□ -1.87
MSX1P28360 CYP2C59P-201ENST00000457790 269 ntBASIC3.37□□□□□ -1.87
MSX1P28360 RN7SL93P-201ENST00000463035 293 ntBASIC3.37□□□□□ -1.87
MSX1P28360 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.37□□□□□ -1.87
MSX1P28360 RNU7-25P-201ENST00000516544 62 ntBASIC3.37□□□□□ -1.87
MSX1P28360 RNU1-142P-201ENST00000516682 145 ntBASIC3.37□□□□□ -1.87
MSX1P28360 AC026421.1-201ENST00000519101 163 ntBASIC3.37□□□□□ -1.87
MSX1P28360 AP002004.2-201ENST00000531656 154 ntBASIC3.37□□□□□ -1.87
MSX1P28360 MIR3199-1-201ENST00000582434 88 ntBASIC3.37□□□□□ -1.87
MSX1P28360 MIR7975-201ENST00000619350 68 ntBASIC3.37□□□□□ -1.87
MSX1P28360 MIR338-201ENST00000636369 67 ntBASIC3.37□□□□□ -1.87
MSX1P28360 AL162726.3-218ENST00000636401 95 ntBASIC3.37□□□□□ -1.87
MSX1P28360 U6.108-201ENST00000637764 58 ntBASIC3.37□□□□□ -1.87
MSX1P28360 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.37□□□□□ -1.87
MSX1P28360 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSX1P28360 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSX1P28360 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSX1P28360 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
MSX1P28360 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
MSX1P28360 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSX1P28360 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.36□□□□□ -1.87
MSX1P28360 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
MSX1P28360 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
MSX1P28360 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSX1P28360 SNORA1B-201ENST00000362535 133 ntBASIC3.36□□□□□ -1.87
MSX1P28360 ATP6V0E1P1-201ENST00000412537 226 ntBASIC3.36□□□□□ -1.87
MSX1P28360 AL353689.1-201ENST00000438895 199 ntBASIC3.36□□□□□ -1.87
MSX1P28360 RNU1-131P-201ENST00000458943 161 ntBASIC3.36□□□□□ -1.87
MSX1P28360 CKS1BP2-201ENST00000497342 240 ntBASIC3.36□□□□□ -1.87
MSX1P28360 RNU7-123P-201ENST00000515911 60 ntBASIC3.36□□□□□ -1.87
MSX1P28360 RNU6-711P-201ENST00000517255 106 ntBASIC3.36□□□□□ -1.87
MSX1P28360 MIR5195-201ENST00000583555 115 ntBASIC3.36□□□□□ -1.87
MSX1P28360 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSX1P28360 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
MSX1P28360 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.35□□□□□ -1.87
MSX1P28360 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
MSX1P28360 SNORD14E-201ENST00000364009 85 ntBASIC3.35□□□□□ -1.87
MSX1P28360 Y_RNA.219-201ENST00000364232 113 ntBASIC3.35□□□□□ -1.87
MSX1P28360 Y_RNA.547-201ENST00000384654 119 ntBASIC3.35□□□□□ -1.87
MSX1P28360 MIR218-2-201ENST00000385006 110 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms