Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
PDGFAP04085 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PDGFAP04085 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
PDGFAP04085 AC245060.5-201ENST00000610778 3293 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PDGFAP04085 MIR126-201ENST00000362291 85 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 Y_RNA.114-201ENST00000363265 113 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 Y_RNA.280-201ENST00000364765 112 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 RNU6-476P-201ENST00000384726 107 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 AL031121.1-201ENST00000406553 254 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 RN7SKP284-201ENST00000411002 343 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 CST2P1-201ENST00000425770 87 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.21□□□□□ -1.9
PDGFAP04085 MTATP6P21-201ENST00000440681 189 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.21□□□□□ -1.9
PDGFAP04085 RPS26P45-201ENST00000471748 340 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 EIF4BP1-201ENST00000554881 351 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 AC133485.4-201ENST00000561835 220 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 AC138907.4-201ENST00000570107 226 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 MIR5680-201ENST00000577577 84 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 MIR4325-201ENST00000583049 90 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 AC008507.4-201ENST00000585464 127 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 U6.95-201ENST00000636931 70 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 MIR3914-2-201ENST00000637339 95 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PDGFAP04085 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.21□□□□□ -1.9
PDGFAP04085 AL035425.3-201ENST00000564206 4996 ntBASIC3.21□□□□□ -1.9
PDGFAP04085 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.2□□□□□ -1.9
PDGFAP04085 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
PDGFAP04085 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PDGFAP04085 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PDGFAP04085 MIR30E-201ENST00000362104 92 ntBASIC3.2□□□□□ -1.9
PDGFAP04085 Y_RNA.52-201ENST00000362760 96 ntBASIC3.2□□□□□ -1.9
PDGFAP04085 MIR627-201ENST00000384979 97 ntBASIC3.2□□□□□ -1.9
PDGFAP04085 AL117342.1-201ENST00000404861 406 ntBASIC3.2□□□□□ -1.9
PDGFAP04085 MIR1262-201ENST00000408276 93 ntBASIC3.2□□□□□ -1.9
PDGFAP04085 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PDGFAP04085 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PDGFAP04085 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.19□□□□□ -1.9
PDGFAP04085 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PDGFAP04085 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
PDGFAP04085 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PDGFAP04085 RNU6-647P-201ENST00000364243 107 ntBASIC3.19□□□□□ -1.9
PDGFAP04085 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PDGFAP04085 SNORD24-201ENST00000383884 75 ntBASIC3.19□□□□□ -1.9
PDGFAP04085 RNU6-1144P-201ENST00000384247 104 ntBASIC3.19□□□□□ -1.9
PDGFAP04085 MIR891A-201ENST00000401237 79 ntBASIC3.19□□□□□ -1.9
PDGFAP04085 AL049830.1-201ENST00000468034 425 ntBASIC3.19□□□□□ -1.9
PDGFAP04085 UBE2DNL-203ENST00000474922 222 ntBASIC3.19□□□□□ -1.9
PDGFAP04085 AL591926.4-201ENST00000616895 298 ntBASIC3.19□□□□□ -1.9
PDGFAP04085 AP003355.3-201ENST00000623465 114 ntBASIC3.19□□□□□ -1.9
PDGFAP04085 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.19□□□□□ -1.9
PDGFAP04085 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PDGFAP04085 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.19□□□□□ -1.9
PDGFAP04085 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PDGFAP04085 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.19□□□□□ -1.9
PDGFAP04085 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PDGFAP04085 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PDGFAP04085 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PDGFAP04085 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
PDGFAP04085 MIR148B-201ENST00000362252 99 ntBASIC3.18□□□□□ -1.9
PDGFAP04085 SNORA33-201ENST00000363664 130 ntBASIC3.18□□□□□ -1.9
PDGFAP04085 MIR802-201ENST00000390235 94 ntBASIC3.18□□□□□ -1.9
PDGFAP04085 RN7SKP220-201ENST00000410611 288 ntBASIC3.18□□□□□ -1.9
PDGFAP04085 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.18□□□□□ -1.9
PDGFAP04085 RNU5E-3P-201ENST00000515913 68 ntBASIC3.18□□□□□ -1.9
PDGFAP04085 RNU6-1061P-201ENST00000516530 99 ntBASIC3.18□□□□□ -1.9
PDGFAP04085 RNU2-60P-201ENST00000517290 128 ntBASIC3.18□□□□□ -1.9
PDGFAP04085 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.18□□□□□ -1.9
PDGFAP04085 MIR3129-201ENST00000581095 76 ntBASIC3.18□□□□□ -1.9
PDGFAP04085 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.18□□□□□ -1.9
PDGFAP04085 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.18□□□□□ -1.9
PDGFAP04085 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PDGFAP04085 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.18□□□□□ -1.9
PDGFAP04085 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
PDGFAP04085 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
PDGFAP04085 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.18□□□□□ -1.9
PDGFAP04085 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PDGFAP04085 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PDGFAP04085 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
PDGFAP04085 SNORA1B-201ENST00000362535 133 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 RNU6-888P-201ENST00000363010 101 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 RNU6-1292P-201ENST00000383856 107 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 Y_RNA.500-201ENST00000384466 111 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 SNORD72-201ENST00000390994 80 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 AC096725.1-201ENST00000514266 313 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 SCGB1D5P-201ENST00000515134 247 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 MTND5P34-201ENST00000568888 325 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 AC026271.5-201ENST00000577873 130 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 AC022217.4-201ENST00000604389 163 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 AC006386.2-201ENST00000624491 75 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 AC012005.1-201ENST00000624575 75 ntBASIC3.17□□□□□ -1.9
PDGFAP04085 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PDGFAP04085 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PDGFAP04085 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.16□□□□□ -1.9
PDGFAP04085 RNU6-862P-201ENST00000362804 105 ntBASIC3.16□□□□□ -1.9
PDGFAP04085 RNA5SP493-201ENST00000364115 91 ntBASIC3.16□□□□□ -1.9
PDGFAP04085 SNORD61-201ENST00000384252 73 ntBASIC3.16□□□□□ -1.9
PDGFAP04085 Y_RNA.510-201ENST00000384511 114 ntBASIC3.16□□□□□ -1.9
PDGFAP04085 FTH1P12-201ENST00000432137 551 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms