Protein–RNA interactions for Protein: H3BM21

Integrin beta (Fragment), humanhuman

Predictions only

Length 787 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3BM21 MIR548O-201ENST00000408583 114 ntBASIC3.68□□□□□ -1.82
H3BM21 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.68□□□□□ -1.82
H3BM21 HMGN2P16-201ENST00000456802 261 ntBASIC3.68□□□□□ -1.82
H3BM21 AL441985.1-201ENST00000457727 251 ntBASIC3.68□□□□□ -1.82
H3BM21 AC110768.1-201ENST00000509222 400 ntBASIC3.68□□□□□ -1.82
H3BM21 HSPE1P19-201ENST00000603327 295 ntBASIC3.68□□□□□ -1.82
H3BM21 RNU1-30P-201ENST00000606575 163 ntBASIC3.68□□□□□ -1.82
H3BM21 U7.8-201ENST00000619968 63 ntBASIC3.68□□□□□ -1.82
H3BM21 AC095038.3-201ENST00000634439 195 ntBASIC3.68□□□□□ -1.82
H3BM21 AC093831.2-201ENST00000624393 3427 ntBASIC3.67□□□□□ -1.82
H3BM21 AC006504.1-201ENST00000562493 3666 ntBASIC3.67□□□□□ -1.82
H3BM21 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
H3BM21 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.67□□□□□ -1.82
H3BM21 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
H3BM21 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
H3BM21 AC010733.2-201ENST00000589496 5702 ntBASIC3.67□□□□□ -1.82
H3BM21 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
H3BM21 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.67□□□□□ -1.82
H3BM21 RNU6-987P-201ENST00000384759 104 ntBASIC3.67□□□□□ -1.82
H3BM21 MIR34B-201ENST00000385076 84 ntBASIC3.67□□□□□ -1.82
H3BM21 RNA5SP424-201ENST00000390988 115 ntBASIC3.67□□□□□ -1.82
H3BM21 Z98742.3-201ENST00000418637 326 ntBASIC3.67□□□□□ -1.82
H3BM21 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.67□□□□□ -1.82
H3BM21 AL110115.1-201ENST00000614396 364 ntBASIC3.67□□□□□ -1.82
H3BM21 MIR8058-201ENST00000615737 89 ntBASIC3.67□□□□□ -1.82
H3BM21 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
H3BM21 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
H3BM21 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
H3BM21 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
H3BM21 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
H3BM21 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
H3BM21 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.66□□□□□ -1.82
H3BM21 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.66□□□□□ -1.82
H3BM21 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
H3BM21 RNU6-457P-201ENST00000363999 107 ntBASIC3.66□□□□□ -1.82
H3BM21 RNU6-743P-201ENST00000364151 106 ntBASIC3.66□□□□□ -1.82
H3BM21 RNA5SP51-201ENST00000364750 119 ntBASIC3.66□□□□□ -1.82
H3BM21 Y_RNA.440-201ENST00000384120 114 ntBASIC3.66□□□□□ -1.82
H3BM21 Y_RNA.609-201ENST00000410669 89 ntBASIC3.66□□□□□ -1.82
H3BM21 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.66□□□□□ -1.82
H3BM21 AC090255.1-201ENST00000495779 349 ntBASIC3.66□□□□□ -1.82
H3BM21 SCGB1D5P-201ENST00000515134 247 ntBASIC3.66□□□□□ -1.82
H3BM21 RNU6-523P-201ENST00000516304 54 ntBASIC3.66□□□□□ -1.82
H3BM21 RNU6-948P-201ENST00000516374 107 ntBASIC3.66□□□□□ -1.82
H3BM21 SNORD36C-201ENST00000516733 66 ntBASIC3.66□□□□□ -1.82
H3BM21 IGHVII-40-1-201ENST00000517316 58 ntBASIC3.66□□□□□ -1.82
H3BM21 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.66□□□□□ -1.82
H3BM21 MIR4778-201ENST00000577635 80 ntBASIC3.66□□□□□ -1.82
H3BM21 MIR4439-201ENST00000583746 80 ntBASIC3.66□□□□□ -1.82
H3BM21 HMGN2P15-201ENST00000585707 270 ntBASIC3.66□□□□□ -1.82
H3BM21 AL359075.3-201ENST00000613288 217 ntBASIC3.66□□□□□ -1.82
H3BM21 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
H3BM21 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.66□□□□□ -1.82
H3BM21 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
H3BM21 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
H3BM21 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.66□□□□□ -1.82
H3BM21 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
H3BM21 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
H3BM21 Y_RNA.37-201ENST00000362606 108 ntBASIC3.65□□□□□ -1.83
H3BM21 RNU1-18P-201ENST00000363062 164 ntBASIC3.65□□□□□ -1.83
H3BM21 SNORD115-27-201ENST00000364430 82 ntBASIC3.65□□□□□ -1.83
H3BM21 RNU6-524P-201ENST00000384270 107 ntBASIC3.65□□□□□ -1.83
H3BM21 RNU1-57P-201ENST00000384491 166 ntBASIC3.65□□□□□ -1.83
H3BM21 MIR520G-201ENST00000385064 90 ntBASIC3.65□□□□□ -1.83
H3BM21 CYCSP35-201ENST00000451978 304 ntBASIC3.65□□□□□ -1.83
H3BM21 RN7SL93P-201ENST00000463035 293 ntBASIC3.65□□□□□ -1.83
H3BM21 RN7SL330P-201ENST00000469709 307 ntBASIC3.65□□□□□ -1.83
H3BM21 MIR449C-201ENST00000516047 92 ntBASIC3.65□□□□□ -1.83
H3BM21 RNU1-61P-201ENST00000516107 151 ntBASIC3.65□□□□□ -1.83
H3BM21 SNORA74D-201ENST00000516404 141 ntBASIC3.65□□□□□ -1.83
H3BM21 SNORD19.2-201ENST00000516978 73 ntBASIC3.65□□□□□ -1.83
H3BM21 AC091544.4-201ENST00000555268 342 ntBASIC3.65□□□□□ -1.83
H3BM21 AC013412.1-201ENST00000610687 192 ntBASIC3.65□□□□□ -1.83
H3BM21 XIST_intron.1-201ENST00000619444 68 ntBASIC3.65□□□□□ -1.83
H3BM21 AC091932.4-201ENST00000623386 200 ntBASIC3.65□□□□□ -1.83
H3BM21 AP000553.6-201ENST00000641242 118 ntBASIC3.65□□□□□ -1.83
H3BM21 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
H3BM21 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
H3BM21 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
H3BM21 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
H3BM21 Y_RNA.351-201ENST00000365436 96 ntBASIC3.64□□□□□ -1.83
H3BM21 MIR147B-201ENST00000390185 80 ntBASIC3.64□□□□□ -1.83
H3BM21 HMGN2P8-201ENST00000391458 268 ntBASIC3.64□□□□□ -1.83
H3BM21 AL512326.2-201ENST00000426359 151 ntBASIC3.64□□□□□ -1.83
H3BM21 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.64□□□□□ -1.83
H3BM21 MIR3200-201ENST00000580767 85 ntBASIC3.64□□□□□ -1.83
H3BM21 AC087685.1-201ENST00000587507 141 ntBASIC3.64□□□□□ -1.83
H3BM21 AC096720.1-201ENST00000604441 183 ntBASIC3.64□□□□□ -1.83
H3BM21 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.64□□□□□ -1.83
H3BM21 MIR7851-201ENST00000610611 160 ntBASIC3.64□□□□□ -1.83
H3BM21 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
H3BM21 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
H3BM21 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.64□□□□□ -1.83
H3BM21 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.64□□□□□ -1.83
H3BM21 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
H3BM21 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
H3BM21 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.63□□□□□ -1.83
H3BM21 ZNF271P-202ENST00000465539 1970 ntBASIC3.63□□□□□ -1.83
H3BM21 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
H3BM21 TNPO1P3-201ENST00000436471 2662 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms