Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 MIR5680-201ENST00000577577 84 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 MIR5009-201ENST00000578736 100 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 AP003355.3-201ENST00000623465 114 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 AL356274.2-201ENST00000624379 3752 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 ZNF720P1-201ENST00000562403 1939 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 SNORA80A-201ENST00000363922 136 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 Y_RNA.242-201ENST00000364473 110 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-1134P-201ENST00000365156 101 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 Y_RNA.593-201ENST00000410292 98 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 COTL1P1-201ENST00000422309 375 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 AL031183.1-201ENST00000457667 207 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 RN7SL429P-201ENST00000479090 223 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 RN7SL489P-201ENST00000486185 223 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 RN7SL327P-201ENST00000488659 223 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-904P-201ENST00000516206 101 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-1096P-201ENST00000517089 102 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-1270P-201ENST00000517128 108 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-1231P-201ENST00000517185 103 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 IGKV2-26-201ENST00000518305 343 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 RN7SL853P-201ENST00000617250 223 ntBASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SH3RF1Q7Z6J0 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 AP003122.5-201ENST00000527668 3766 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 MIR302B-201ENST00000362188 73 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 Y_RNA.362-201ENST00000365518 110 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-1083P-201ENST00000384022 107 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 AL513477.1-202ENST00000417061 214 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 PGBD4P5-201ENST00000445958 426 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 AC010401.1-201ENST00000463867 348 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 MRPS17P9-201ENST00000511924 393 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-1149P-201ENST00000516810 97 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 MIR4474-201ENST00000579189 78 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 AL162274.2-201ENST00000614406 332 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SH3RF1Q7Z6J0 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SH3RF1Q7Z6J0 Y_RNA.93-201ENST00000363066 109 ntBASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 Y_RNA.244-201ENST00000364484 109 ntBASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 MIR181B1-201ENST00000385240 110 ntBASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 SNORA4.4-201ENST00000515921 135 ntBASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 AL033523.1-201ENST00000605153 153 ntBASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 AL353746.1-201ENST00000566293 6881 ntBASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
SH3RF1Q7Z6J0 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 AL355596.1-201ENST00000565399 3996 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 Y_RNA.366-201ENST00000365540 102 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 RNU6-1296P-201ENST00000383879 107 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 SNORD24-201ENST00000383884 75 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 SNORD61-201ENST00000384252 73 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 MIR759-201ENST00000390224 91 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 HMGN1P7-201ENST00000491722 313 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 SNORA31.1-201ENST00000515993 133 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 SNORA31.5-201ENST00000516190 133 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 RNA5SP341-201ENST00000516261 117 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 SNORA70.19-201ENST00000516717 90 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 RNA5SP490-201ENST00000517141 136 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 AC068339.1-201ENST00000526965 141 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 FAM71BP1-201ENST00000604431 523 ntBASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.89□□□□□ -1.79
SH3RF1Q7Z6J0 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 RNU6-888P-201ENST00000363010 101 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 RNY4P6-201ENST00000363667 96 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 Y_RNA.198-201ENST00000364013 98 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 MIR1183-201ENST00000408856 89 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 RNU6-1077P-201ENST00000410506 102 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 SNRPGP10-201ENST00000432323 225 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 HMGN2P18-201ENST00000450680 270 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 AC011406.1-201ENST00000512440 370 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 IGKV3-31-201ENST00000523109 329 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 AC090115.4-201ENST00000609970 188 ntBASIC3.88□□□□□ -1.79
SH3RF1Q7Z6J0 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms