Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RNA5SP489-201ENST00000410986 109 ntBASIC2.12□□□□□ -2.07
NEK3P51956 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.12□□□□□ -2.07
NEK3P51956 MTND1P14-201ENST00000427400 950 ntBASIC2.12□□□□□ -2.07
NEK3P51956 RNU6-155P-201ENST00000516347 100 ntBASIC2.12□□□□□ -2.07
NEK3P51956 Y_RNA.715-201ENST00000517082 110 ntBASIC2.12□□□□□ -2.07
NEK3P51956 AL162424.1-201ENST00000602325 221 ntBASIC2.12□□□□□ -2.07
NEK3P51956 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
NEK3P51956 RNU6-710P-201ENST00000410424 105 ntBASIC2.11□□□□□ -2.07
NEK3P51956 RN7SKP200-201ENST00000410564 320 ntBASIC2.11□□□□□ -2.07
NEK3P51956 RNU6-1199P-201ENST00000411249 104 ntBASIC2.11□□□□□ -2.07
NEK3P51956 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.11□□□□□ -2.07
NEK3P51956 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
NEK3P51956 JTBP1-201ENST00000441314 247 ntBASIC2.11□□□□□ -2.07
NEK3P51956 RPS27P1-201ENST00000450552 247 ntBASIC2.11□□□□□ -2.07
NEK3P51956 AC008834.1-201ENST00000511612 175 ntBASIC2.11□□□□□ -2.07
NEK3P51956 RNU1-40P-201ENST00000516816 164 ntBASIC2.11□□□□□ -2.07
NEK3P51956 RNU1-97P-201ENST00000516872 164 ntBASIC2.11□□□□□ -2.07
NEK3P51956 AL356055.1-201ENST00000602528 446 ntBASIC2.11□□□□□ -2.07
NEK3P51956 AC073413.2-201ENST00000604332 360 ntBASIC2.11□□□□□ -2.07
NEK3P51956 AC011373.1-201ENST00000607270 237 ntBASIC2.11□□□□□ -2.07
NEK3P51956 AC040896.1-201ENST00000613819 479 ntBASIC2.11□□□□□ -2.07
NEK3P51956 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.11□□□□□ -2.07
NEK3P51956 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
NEK3P51956 RNU6-117P-201ENST00000365415 107 ntBASIC2.1□□□□□ -2.07
NEK3P51956 Y_RNA.389-201ENST00000383924 113 ntBASIC2.1□□□□□ -2.07
NEK3P51956 MIR520G-201ENST00000385064 90 ntBASIC2.1□□□□□ -2.07
NEK3P51956 RNU2-61P-201ENST00000411069 191 ntBASIC2.1□□□□□ -2.07
NEK3P51956 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.1□□□□□ -2.07
NEK3P51956 MIR4709-201ENST00000577272 72 ntBASIC2.1□□□□□ -2.07
NEK3P51956 AC104695.3-201ENST00000604052 296 ntBASIC2.1□□□□□ -2.07
NEK3P51956 AC022217.4-201ENST00000604389 163 ntBASIC2.1□□□□□ -2.07
NEK3P51956 MIR6079-201ENST00000635807 62 ntBASIC2.1□□□□□ -2.07
NEK3P51956 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
NEK3P51956 Y_RNA.183-201ENST00000363882 113 ntBASIC2.09□□□□□ -2.07
NEK3P51956 RNU6-376P-201ENST00000384731 106 ntBASIC2.09□□□□□ -2.07
NEK3P51956 RPL21P1-201ENST00000399532 476 ntBASIC2.09□□□□□ -2.07
NEK3P51956 AC024067.1-201ENST00000426199 223 ntBASIC2.09□□□□□ -2.07
NEK3P51956 AC245047.3-201ENST00000429428 127 ntBASIC2.09□□□□□ -2.07
NEK3P51956 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.09□□□□□ -2.07
NEK3P51956 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.09□□□□□ -2.07
NEK3P51956 RNA5SP364-201ENST00000516938 78 ntBASIC2.09□□□□□ -2.07
NEK3P51956 AL442663.2-201ENST00000554385 511 ntBASIC2.09□□□□□ -2.07
NEK3P51956 AC002984.1-201ENST00000591692 448 ntBASIC2.09□□□□□ -2.07
NEK3P51956 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.09□□□□□ -2.07
NEK3P51956 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
NEK3P51956 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.08
NEK3P51956 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
NEK3P51956 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
NEK3P51956 Y_RNA.152-201ENST00000363578 100 ntBASIC2.08□□□□□ -2.08
NEK3P51956 RNU6-505P-201ENST00000384427 107 ntBASIC2.08□□□□□ -2.08
NEK3P51956 RNA5SP109-201ENST00000391010 116 ntBASIC2.08□□□□□ -2.08
NEK3P51956 MIR1267-201ENST00000408723 78 ntBASIC2.08□□□□□ -2.08
NEK3P51956 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.08□□□□□ -2.08
NEK3P51956 AL445646.1-201ENST00000431784 216 ntBASIC2.08□□□□□ -2.08
NEK3P51956 RNU6-436P-201ENST00000516171 114 ntBASIC2.08□□□□□ -2.08
NEK3P51956 RNU6-341P-201ENST00000516973 96 ntBASIC2.08□□□□□ -2.08
NEK3P51956 AL358944.1-201ENST00000528537 144 ntBASIC2.08□□□□□ -2.08
NEK3P51956 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.08□□□□□ -2.08
NEK3P51956 AL355297.3-201ENST00000604082 446 ntBASIC2.08□□□□□ -2.08
NEK3P51956 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.08□□□□□ -2.08
NEK3P51956 uc_338.20-201ENST00000621563 178 ntBASIC2.08□□□□□ -2.08
NEK3P51956 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
NEK3P51956 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
NEK3P51956 Y_RNA.124-201ENST00000363339 93 ntBASIC2.07□□□□□ -2.08
NEK3P51956 RNU6-324P-201ENST00000363957 106 ntBASIC2.07□□□□□ -2.08
NEK3P51956 Y_RNA.276-201ENST00000364732 109 ntBASIC2.07□□□□□ -2.08
NEK3P51956 Y_RNA.331-201ENST00000365267 102 ntBASIC2.07□□□□□ -2.08
NEK3P51956 Y_RNA.422-201ENST00000384054 114 ntBASIC2.07□□□□□ -2.08
NEK3P51956 Y_RNA.455-201ENST00000384230 98 ntBASIC2.07□□□□□ -2.08
NEK3P51956 RNU6-21P-201ENST00000384710 107 ntBASIC2.07□□□□□ -2.08
NEK3P51956 MIR504-201ENST00000385065 83 ntBASIC2.07□□□□□ -2.08
NEK3P51956 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
NEK3P51956 MIR934-201ENST00000401241 83 ntBASIC2.07□□□□□ -2.08
NEK3P51956 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.07□□□□□ -2.08
NEK3P51956 RNU2-20P-201ENST00000410425 191 ntBASIC2.07□□□□□ -2.08
NEK3P51956 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.07□□□□□ -2.08
NEK3P51956 SEPT14P8-201ENST00000508026 178 ntBASIC2.07□□□□□ -2.08
NEK3P51956 RNU7-28P-201ENST00000516759 62 ntBASIC2.07□□□□□ -2.08
NEK3P51956 RNU7-110P-201ENST00000516891 62 ntBASIC2.07□□□□□ -2.08
NEK3P51956 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.07□□□□□ -2.08
NEK3P51956 SNORA28-201ENST00000606769 126 ntBASIC2.07□□□□□ -2.08
NEK3P51956 SNORD113-5-201ENST00000607261 78 ntBASIC2.07□□□□□ -2.08
NEK3P51956 PART1_1.1-201ENST00000611761 217 ntBASIC2.07□□□□□ -2.08
NEK3P51956 MIR8054-201ENST00000620877 86 ntBASIC2.07□□□□□ -2.08
NEK3P51956 SNORA33.2-201ENST00000365413 134 ntBASIC2.06□□□□□ -2.08
NEK3P51956 HMGN2P23-201ENST00000456759 269 ntBASIC2.06□□□□□ -2.08
NEK3P51956 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
NEK3P51956 MIR3935-201ENST00000583472 104 ntBASIC2.06□□□□□ -2.08
NEK3P51956 AC091178.2-201ENST00000584401 117 ntBASIC2.06□□□□□ -2.08
NEK3P51956 AC016925.2-201ENST00000605108 242 ntBASIC2.06□□□□□ -2.08
NEK3P51956 AL021879.1-201ENST00000611756 288 ntBASIC2.06□□□□□ -2.08
NEK3P51956 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
NEK3P51956 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
NEK3P51956 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
NEK3P51956 Y_RNA.143-201ENST00000363520 106 ntBASIC2.05□□□□□ -2.08
NEK3P51956 RNU6-639P-201ENST00000384074 107 ntBASIC2.05□□□□□ -2.08
NEK3P51956 RNU6-440P-201ENST00000390882 105 ntBASIC2.05□□□□□ -2.08
NEK3P51956 RNU6-130P-201ENST00000411112 103 ntBASIC2.05□□□□□ -2.08
NEK3P51956 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.05□□□□□ -2.08
NEK3P51956 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 213.1 ms