Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.67□□□□□ -1.98
MSX2P35548 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.67□□□□□ -1.98
MSX2P35548 Y_RNA.127-201ENST00000363386 109 ntBASIC2.67□□□□□ -1.98
MSX2P35548 RNY3P5-201ENST00000384127 102 ntBASIC2.67□□□□□ -1.98
MSX2P35548 AL135786.1-201ENST00000415892 214 ntBASIC2.67□□□□□ -1.98
MSX2P35548 AC016909.1-201ENST00000415916 166 ntBASIC2.67□□□□□ -1.98
MSX2P35548 AC092991.1-201ENST00000477176 376 ntBASIC2.67□□□□□ -1.98
MSX2P35548 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.67□□□□□ -1.98
MSX2P35548 RNA5SP20-201ENST00000515976 84 ntBASIC2.67□□□□□ -1.98
MSX2P35548 AC025647.1-201ENST00000517879 253 ntBASIC2.67□□□□□ -1.98
MSX2P35548 MIR3646-201ENST00000578301 84 ntBASIC2.67□□□□□ -1.98
MSX2P35548 POLR3GP1-201ENST00000594073 261 ntBASIC2.67□□□□□ -1.98
MSX2P35548 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.67□□□□□ -1.98
MSX2P35548 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.67□□□□□ -1.98
MSX2P35548 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
MSX2P35548 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
MSX2P35548 AL355596.1-201ENST00000565399 3996 ntBASIC2.66□□□□□ -1.98
MSX2P35548 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
MSX2P35548 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
MSX2P35548 RNY1P11-201ENST00000363759 113 ntBASIC2.66□□□□□ -1.98
MSX2P35548 RNU6-117P-201ENST00000365415 107 ntBASIC2.66□□□□□ -1.98
MSX2P35548 SNORD116-14-201ENST00000383894 92 ntBASIC2.66□□□□□ -1.98
MSX2P35548 SNORD116-17-201ENST00000383929 92 ntBASIC2.66□□□□□ -1.98
MSX2P35548 SNORD116-15-201ENST00000384445 92 ntBASIC2.66□□□□□ -1.98
MSX2P35548 SNORD116-19-201ENST00000384729 92 ntBASIC2.66□□□□□ -1.98
MSX2P35548 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
MSX2P35548 RNU4-47P-201ENST00000410876 114 ntBASIC2.66□□□□□ -1.98
MSX2P35548 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.66□□□□□ -1.98
MSX2P35548 AC010531.2-201ENST00000465012 153 ntBASIC2.66□□□□□ -1.98
MSX2P35548 AC008885.1-201ENST00000514930 301 ntBASIC2.66□□□□□ -1.98
MSX2P35548 RNU6-1333P-201ENST00000516162 93 ntBASIC2.66□□□□□ -1.98
MSX2P35548 SNORA9.3-201ENST00000516383 129 ntBASIC2.66□□□□□ -1.98
MSX2P35548 RNU6-63P-201ENST00000516690 95 ntBASIC2.66□□□□□ -1.98
MSX2P35548 RNU7-116P-201ENST00000516940 62 ntBASIC2.66□□□□□ -1.98
MSX2P35548 RNU6-586P-201ENST00000517265 104 ntBASIC2.66□□□□□ -1.98
MSX2P35548 AC027419.1-201ENST00000522976 328 ntBASIC2.66□□□□□ -1.98
MSX2P35548 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.66□□□□□ -1.98
MSX2P35548 AC005972.2-201ENST00000604690 348 ntBASIC2.66□□□□□ -1.98
MSX2P35548 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.66□□□□□ -1.98
MSX2P35548 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
MSX2P35548 Z82195.2-201ENST00000612348 18351 ntBASIC2.66□□□□□ -1.98
MSX2P35548 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
MSX2P35548 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.66□□□□□ -1.98
MSX2P35548 AC009487.4-201ENST00000624969 3585 ntBASIC2.65□□□□□ -1.98
MSX2P35548 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.98
MSX2P35548 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.65□□□□□ -1.98
MSX2P35548 RNU6-674P-201ENST00000363831 107 ntBASIC2.65□□□□□ -1.99
MSX2P35548 SNORD45.3-201ENST00000363836 72 ntBASIC2.65□□□□□ -1.99
MSX2P35548 Y_RNA.393-201ENST00000383936 102 ntBASIC2.65□□□□□ -1.99
MSX2P35548 RNU6-1235P-201ENST00000384559 107 ntBASIC2.65□□□□□ -1.99
MSX2P35548 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
MSX2P35548 SNORD37.2-201ENST00000391075 66 ntBASIC2.65□□□□□ -1.99
MSX2P35548 RN7SKP101-201ENST00000411376 320 ntBASIC2.65□□□□□ -1.99
MSX2P35548 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.65□□□□□ -1.99
MSX2P35548 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.65□□□□□ -1.99
MSX2P35548 AC104389.3-201ENST00000445629 235 ntBASIC2.65□□□□□ -1.99
MSX2P35548 RNU6-437P-201ENST00000459408 95 ntBASIC2.65□□□□□ -1.99
MSX2P35548 RNU6-498P-201ENST00000459468 107 ntBASIC2.65□□□□□ -1.99
MSX2P35548 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.65□□□□□ -1.99
MSX2P35548 RNU6-1234P-201ENST00000516877 103 ntBASIC2.65□□□□□ -1.99
MSX2P35548 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
MSX2P35548 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.65□□□□□ -1.99
MSX2P35548 ZNF861P-201ENST00000588126 639 ntBASIC2.65□□□□□ -1.99
MSX2P35548 AL021707.8-201ENST00000609428 183 ntBASIC2.65□□□□□ -1.99
MSX2P35548 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
MSX2P35548 MIR7112-201ENST00000616126 65 ntBASIC2.65□□□□□ -1.99
MSX2P35548 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.65□□□□□ -1.99
MSX2P35548 MIR1248-201ENST00000629190 106 ntBASIC2.65□□□□□ -1.99
MSX2P35548 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.65□□□□□ -1.99
MSX2P35548 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
MSX2P35548 CENPCP1-201ENST00000533085 2578 ntBASIC2.65□□□□□ -1.99
MSX2P35548 Z82209.1-201ENST00000422141 2135 ntBASIC2.65□□□□□ -1.99
MSX2P35548 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
MSX2P35548 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
MSX2P35548 AC080100.1-201ENST00000624239 5356 ntBASIC2.64□□□□□ -1.99
MSX2P35548 VTRNA1-1-201ENST00000363120 99 ntBASIC2.64□□□□□ -1.99
MSX2P35548 Y_RNA.251-201ENST00000364551 99 ntBASIC2.64□□□□□ -1.99
MSX2P35548 SNORA9.2-201ENST00000365361 133 ntBASIC2.64□□□□□ -1.99
MSX2P35548 MIR539-201ENST00000365690 78 ntBASIC2.64□□□□□ -1.99
MSX2P35548 RNU6-418P-201ENST00000384035 107 ntBASIC2.64□□□□□ -1.99
MSX2P35548 RNU6-460P-201ENST00000391158 108 ntBASIC2.64□□□□□ -1.99
MSX2P35548 RNA5SP511-201ENST00000410487 115 ntBASIC2.64□□□□□ -1.99
MSX2P35548 AC006028.1-201ENST00000438379 402 ntBASIC2.64□□□□□ -1.99
MSX2P35548 RPS27P1-201ENST00000450552 247 ntBASIC2.64□□□□□ -1.99
MSX2P35548 SNRPGP8-201ENST00000454064 226 ntBASIC2.64□□□□□ -1.99
MSX2P35548 RNU6-1211P-201ENST00000459179 105 ntBASIC2.64□□□□□ -1.99
MSX2P35548 RPL23AP54-201ENST00000495129 419 ntBASIC2.64□□□□□ -1.99
MSX2P35548 RNU6-948P-201ENST00000516374 107 ntBASIC2.64□□□□□ -1.99
MSX2P35548 RPPH1-2P-201ENST00000516688 293 ntBASIC2.64□□□□□ -1.99
MSX2P35548 AC015720.1-201ENST00000565251 277 ntBASIC2.64□□□□□ -1.99
MSX2P35548 MIR5680-201ENST00000577577 84 ntBASIC2.64□□□□□ -1.99
MSX2P35548 MIR3605-201ENST00000583214 100 ntBASIC2.64□□□□□ -1.99
MSX2P35548 MIR4298-201ENST00000584380 73 ntBASIC2.64□□□□□ -1.99
MSX2P35548 YPEL5P2-201ENST00000605553 359 ntBASIC2.64□□□□□ -1.99
MSX2P35548 AC006435.5-201ENST00000624486 112 ntBASIC2.64□□□□□ -1.99
MSX2P35548 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
MSX2P35548 MIR6844-201ENST00000637122 62 ntBASIC2.64□□□□□ -1.99
MSX2P35548 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
MSX2P35548 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
MSX2P35548 SNORA25.6-201ENST00000364121 118 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms