Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-820P-201ENST00000384273 107 ntBASIC3.45□□□□□ -1.86
MSX1P28360 RNA5SP424-201ENST00000390988 115 ntBASIC3.45□□□□□ -1.86
MSX1P28360 AC244505.4-201ENST00000434905 287 ntBASIC3.45□□□□□ -1.86
MSX1P28360 SSXP5-201ENST00000443473 287 ntBASIC3.45□□□□□ -1.86
MSX1P28360 AC106707.2-201ENST00000484182 374 ntBASIC3.45□□□□□ -1.86
MSX1P28360 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.45□□□□□ -1.86
MSX1P28360 RNU6-904P-201ENST00000516206 101 ntBASIC3.45□□□□□ -1.86
MSX1P28360 AC022695.1-201ENST00000522089 237 ntBASIC3.45□□□□□ -1.86
MSX1P28360 AC084364.2-201ENST00000546924 395 ntBASIC3.45□□□□□ -1.86
MSX1P28360 MIR5187-201ENST00000583479 76 ntBASIC3.45□□□□□ -1.86
MSX1P28360 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
MSX1P28360 SNORA62.6-201ENST00000606322 83 ntBASIC3.45□□□□□ -1.86
MSX1P28360 SNORD115-40-201ENST00000606510 82 ntBASIC3.45□□□□□ -1.86
MSX1P28360 AL359075.3-201ENST00000613288 217 ntBASIC3.45□□□□□ -1.86
MSX1P28360 UCA1.1-201ENST00000620952 75 ntBASIC3.45□□□□□ -1.86
MSX1P28360 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
MSX1P28360 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
MSX1P28360 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
MSX1P28360 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
MSX1P28360 GABRG2-229ENST00000641017 3628 ntBASIC3.44□□□□□ -1.86
MSX1P28360 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.44□□□□□ -1.86
MSX1P28360 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
MSX1P28360 MIR340-201ENST00000362125 95 ntBASIC3.44□□□□□ -1.86
MSX1P28360 snoU2-30.2-201ENST00000362805 70 ntBASIC3.44□□□□□ -1.86
MSX1P28360 RNA5SP72-201ENST00000364442 117 ntBASIC3.44□□□□□ -1.86
MSX1P28360 RNU6-1189P-201ENST00000383958 107 ntBASIC3.44□□□□□ -1.86
MSX1P28360 MIR450A2-201ENST00000385022 100 ntBASIC3.44□□□□□ -1.86
MSX1P28360 MT-TI-201ENST00000387365 69 ntBASIC3.44□□□□□ -1.86
MSX1P28360 FTH1P12-201ENST00000432137 551 ntBASIC3.44□□□□□ -1.86
MSX1P28360 MICF-203ENST00000432679 129 ntBASIC3.44□□□□□ -1.86
MSX1P28360 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.44□□□□□ -1.86
MSX1P28360 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.44□□□□□ -1.86
MSX1P28360 AC021443.1-201ENST00000604478 211 ntBASIC3.44□□□□□ -1.86
MSX1P28360 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.44□□□□□ -1.86
MSX1P28360 MIR6079-201ENST00000635807 62 ntBASIC3.44□□□□□ -1.86
MSX1P28360 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSX1P28360 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.44□□□□□ -1.86
MSX1P28360 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSX1P28360 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
MSX1P28360 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
MSX1P28360 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
MSX1P28360 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
MSX1P28360 ZNF720P1-201ENST00000562403 1939 ntBASIC3.43□□□□□ -1.86
MSX1P28360 Y_RNA.267-201ENST00000364679 109 ntBASIC3.43□□□□□ -1.86
MSX1P28360 Y_RNA.298-201ENST00000364960 107 ntBASIC3.43□□□□□ -1.86
MSX1P28360 MIR522-201ENST00000385071 87 ntBASIC3.43□□□□□ -1.86
MSX1P28360 RPS29P4-201ENST00000414733 161 ntBASIC3.43□□□□□ -1.86
MSX1P28360 TRBV12-2-201ENST00000489763 344 ntBASIC3.43□□□□□ -1.86
MSX1P28360 SCARNA14-201ENST00000516903 136 ntBASIC3.43□□□□□ -1.86
MSX1P28360 AC141557.1-201ENST00000540982 400 ntBASIC3.43□□□□□ -1.86
MSX1P28360 U3.45-201ENST00000607547 219 ntBASIC3.43□□□□□ -1.86
MSX1P28360 MALAT1.1-201ENST00000618249 95 ntBASIC3.43□□□□□ -1.86
MSX1P28360 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
MSX1P28360 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
MSX1P28360 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
MSX1P28360 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
MSX1P28360 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
MSX1P28360 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
MSX1P28360 AC073346.2-201ENST00000624724 2058 ntBASIC3.42□□□□□ -1.86
MSX1P28360 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
MSX1P28360 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.42□□□□□ -1.86
MSX1P28360 MIR302B-201ENST00000362188 73 ntBASIC3.42□□□□□ -1.86
MSX1P28360 SNORA14A-201ENST00000364773 135 ntBASIC3.42□□□□□ -1.86
MSX1P28360 Y_RNA.344-201ENST00000365381 112 ntBASIC3.42□□□□□ -1.86
MSX1P28360 RNU6-573P-201ENST00000383938 106 ntBASIC3.42□□□□□ -1.86
MSX1P28360 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.42□□□□□ -1.86
MSX1P28360 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.42□□□□□ -1.86
MSX1P28360 Y_RNA.685-201ENST00000516532 108 ntBASIC3.42□□□□□ -1.86
MSX1P28360 SUMO2P16-201ENST00000519475 264 ntBASIC3.42□□□□□ -1.86
MSX1P28360 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.42□□□□□ -1.86
MSX1P28360 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.42□□□□□ -1.86
MSX1P28360 MIR3200-201ENST00000580767 85 ntBASIC3.42□□□□□ -1.86
MSX1P28360 MIR486-1-201ENST00000612171 68 ntBASIC3.42□□□□□ -1.86
MSX1P28360 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.42□□□□□ -1.86
MSX1P28360 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
MSX1P28360 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
MSX1P28360 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSX1P28360 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
MSX1P28360 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSX1P28360 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSX1P28360 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSX1P28360 RNA5SP295-201ENST00000362655 121 ntBASIC3.41□□□□□ -1.86
MSX1P28360 Y_RNA.93-201ENST00000363066 109 ntBASIC3.41□□□□□ -1.86
MSX1P28360 MIR548D2-201ENST00000384955 97 ntBASIC3.41□□□□□ -1.86
MSX1P28360 MIR183-201ENST00000384958 110 ntBASIC3.41□□□□□ -1.86
MSX1P28360 MIR802-201ENST00000390235 94 ntBASIC3.41□□□□□ -1.86
MSX1P28360 U8.17-201ENST00000391292 132 ntBASIC3.41□□□□□ -1.86
MSX1P28360 MIR548O-201ENST00000408583 114 ntBASIC3.41□□□□□ -1.86
MSX1P28360 AL035423.1-201ENST00000420331 213 ntBASIC3.41□□□□□ -1.86
MSX1P28360 AL161788.1-201ENST00000441805 169 ntBASIC3.41□□□□□ -1.86
MSX1P28360 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3.41□□□□□ -1.86
MSX1P28360 RNU6-991P-201ENST00000516168 107 ntBASIC3.41□□□□□ -1.86
MSX1P28360 RNU7-70P-201ENST00000516941 66 ntBASIC3.41□□□□□ -1.86
MSX1P28360 SCARNA3-201ENST00000517097 143 ntBASIC3.41□□□□□ -1.86
MSX1P28360 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.41□□□□□ -1.86
MSX1P28360 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.41□□□□□ -1.86
MSX1P28360 AC091544.4-201ENST00000555268 342 ntBASIC3.41□□□□□ -1.86
MSX1P28360 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.41□□□□□ -1.86
MSX1P28360 MIR5739-201ENST00000619803 80 ntBASIC3.41□□□□□ -1.86
MSX1P28360 U6.105-201ENST00000637379 88 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 162.6 ms