Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
RNF4P78317 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
RNF4P78317 Y_RNA.203-201ENST00000364106 102 ntBASIC3□□□□□ -1.93
RNF4P78317 RNU6-1180P-201ENST00000364935 107 ntBASIC3□□□□□ -1.93
RNF4P78317 RNA5SP229-201ENST00000410809 99 ntBASIC3□□□□□ -1.93
RNF4P78317 RNU4-47P-201ENST00000410876 114 ntBASIC3□□□□□ -1.93
RNF4P78317 AC060773.1-201ENST00000421698 310 ntBASIC3□□□□□ -1.93
RNF4P78317 AC008267.6-201ENST00000441664 139 ntBASIC3□□□□□ -1.93
RNF4P78317 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3□□□□□ -1.93
RNF4P78317 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3□□□□□ -1.93
RNF4P78317 MIR3646-201ENST00000578301 84 ntBASIC3□□□□□ -1.93
RNF4P78317 MIR5195-201ENST00000583555 115 ntBASIC3□□□□□ -1.93
RNF4P78317 AC120024.3-201ENST00000603167 156 ntBASIC3□□□□□ -1.93
RNF4P78317 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
RNF4P78317 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3□□□□□ -1.93
RNF4P78317 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
RNF4P78317 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.99□□□□□ -1.93
RNF4P78317 Y_RNA.71-201ENST00000362892 104 ntBASIC2.99□□□□□ -1.93
RNF4P78317 RNU6-1082P-201ENST00000364574 107 ntBASIC2.99□□□□□ -1.93
RNF4P78317 RNA5SP125-201ENST00000364843 120 ntBASIC2.99□□□□□ -1.93
RNF4P78317 RNU6-1080P-201ENST00000383982 107 ntBASIC2.99□□□□□ -1.93
RNF4P78317 Y_RNA.432-201ENST00000384087 111 ntBASIC2.99□□□□□ -1.93
RNF4P78317 MIR1289-1-201ENST00000408836 144 ntBASIC2.99□□□□□ -1.93
RNF4P78317 RNU6-1186P-201ENST00000410429 97 ntBASIC2.99□□□□□ -1.93
RNF4P78317 AC245102.2-201ENST00000448956 180 ntBASIC2.99□□□□□ -1.93
RNF4P78317 RPS29P21-201ENST00000496272 170 ntBASIC2.99□□□□□ -1.93
RNF4P78317 RNU6-1333P-201ENST00000516162 93 ntBASIC2.99□□□□□ -1.93
RNF4P78317 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.99□□□□□ -1.93
RNF4P78317 AC073413.2-201ENST00000604332 360 ntBASIC2.99□□□□□ -1.93
RNF4P78317 YPEL5P2-201ENST00000605553 359 ntBASIC2.99□□□□□ -1.93
RNF4P78317 U2.20-201ENST00000613956 192 ntBASIC2.99□□□□□ -1.93
RNF4P78317 MIR3651-201ENST00000630427 90 ntBASIC2.99□□□□□ -1.93
RNF4P78317 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
RNF4P78317 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.99□□□□□ -1.93
RNF4P78317 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
RNF4P78317 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
RNF4P78317 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.98□□□□□ -1.93
RNF4P78317 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.98□□□□□ -1.93
RNF4P78317 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.98□□□□□ -1.93
RNF4P78317 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
RNF4P78317 RNU6-461P-201ENST00000364195 107 ntBASIC2.98□□□□□ -1.93
RNF4P78317 RNU6-484P-201ENST00000384016 107 ntBASIC2.98□□□□□ -1.93
RNF4P78317 SNORA75.5-201ENST00000391291 81 ntBASIC2.98□□□□□ -1.93
RNF4P78317 SNORA11.1-201ENST00000408133 129 ntBASIC2.98□□□□□ -1.93
RNF4P78317 AC010401.1-201ENST00000463867 348 ntBASIC2.98□□□□□ -1.93
RNF4P78317 AC018868.1-201ENST00000491307 315 ntBASIC2.98□□□□□ -1.93
RNF4P78317 AC091826.1-201ENST00000514065 313 ntBASIC2.98□□□□□ -1.93
RNF4P78317 AC011604.1-201ENST00000545978 196 ntBASIC2.98□□□□□ -1.93
RNF4P78317 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.98□□□□□ -1.93
RNF4P78317 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.98□□□□□ -1.93
RNF4P78317 MIR2682-201ENST00000580305 110 ntBASIC2.98□□□□□ -1.93
RNF4P78317 MIR378D2-201ENST00000580636 98 ntBASIC2.98□□□□□ -1.93
RNF4P78317 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.98□□□□□ -1.93
RNF4P78317 AC011603.4-201ENST00000611325 277 ntBASIC2.98□□□□□ -1.93
RNF4P78317 U6.73-201ENST00000619194 103 ntBASIC2.98□□□□□ -1.93
RNF4P78317 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.98□□□□□ -1.93
RNF4P78317 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.98□□□□□ -1.93
RNF4P78317 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.98□□□□□ -1.93
RNF4P78317 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.98□□□□□ -1.93
RNF4P78317 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.97□□□□□ -1.93
RNF4P78317 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.97□□□□□ -1.93
RNF4P78317 AC008264.2-201ENST00000610193 3731 ntBASIC2.97□□□□□ -1.93
RNF4P78317 AC245060.5-201ENST00000610778 3293 ntBASIC2.97□□□□□ -1.93
RNF4P78317 Y_RNA.621-201ENST00000411065 96 ntBASIC2.97□□□□□ -1.93
RNF4P78317 RPL23AP58-201ENST00000440453 469 ntBASIC2.97□□□□□ -1.93
RNF4P78317 RN7SL863P-201ENST00000462370 296 ntBASIC2.97□□□□□ -1.93
RNF4P78317 RN7SL504P-201ENST00000494496 287 ntBASIC2.97□□□□□ -1.93
RNF4P78317 RNU6-197P-201ENST00000516680 100 ntBASIC2.97□□□□□ -1.93
RNF4P78317 RNU2-56P-201ENST00000516826 190 ntBASIC2.97□□□□□ -1.93
RNF4P78317 RNU6-1096P-201ENST00000517089 102 ntBASIC2.97□□□□□ -1.93
RNF4P78317 SNORA70.24-201ENST00000517233 118 ntBASIC2.97□□□□□ -1.93
RNF4P78317 MIR5004-201ENST00000579078 107 ntBASIC2.97□□□□□ -1.93
RNF4P78317 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
RNF4P78317 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.97□□□□□ -1.93
RNF4P78317 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
RNF4P78317 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.96□□□□□ -1.94
RNF4P78317 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
RNF4P78317 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
RNF4P78317 Y_RNA.127-201ENST00000363386 109 ntBASIC2.96□□□□□ -1.94
RNF4P78317 RNU6-1209P-201ENST00000363655 107 ntBASIC2.96□□□□□ -1.94
RNF4P78317 SNORD50B-201ENST00000364995 70 ntBASIC2.96□□□□□ -1.94
RNF4P78317 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.96□□□□□ -1.94
RNF4P78317 HMGN1P18-201ENST00000457642 277 ntBASIC2.96□□□□□ -1.94
RNF4P78317 AC011406.1-201ENST00000512440 370 ntBASIC2.96□□□□□ -1.94
RNF4P78317 RNU6-1299P-201ENST00000516316 100 ntBASIC2.96□□□□□ -1.94
RNF4P78317 AP001328.1-201ENST00000528550 176 ntBASIC2.96□□□□□ -1.94
RNF4P78317 AL161756.2-201ENST00000604597 246 ntBASIC2.96□□□□□ -1.94
RNF4P78317 uc_338.25-201ENST00000613756 156 ntBASIC2.96□□□□□ -1.94
RNF4P78317 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.95□□□□□ -1.94
RNF4P78317 snoU2-30.2-201ENST00000362805 70 ntBASIC2.95□□□□□ -1.94
RNF4P78317 Y_RNA.91-201ENST00000363042 107 ntBASIC2.95□□□□□ -1.94
RNF4P78317 Y_RNA.796-201ENST00000364268 102 ntBASIC2.95□□□□□ -1.94
RNF4P78317 Y_RNA.799-201ENST00000364992 102 ntBASIC2.95□□□□□ -1.94
RNF4P78317 MIR539-201ENST00000365690 78 ntBASIC2.95□□□□□ -1.94
RNF4P78317 SNORD116-14-201ENST00000383894 92 ntBASIC2.95□□□□□ -1.94
RNF4P78317 SNORD116-17-201ENST00000383929 92 ntBASIC2.95□□□□□ -1.94
RNF4P78317 SNORD116-15-201ENST00000384445 92 ntBASIC2.95□□□□□ -1.94
RNF4P78317 SNORD116-19-201ENST00000384729 92 ntBASIC2.95□□□□□ -1.94
RNF4P78317 MIR561-201ENST00000385216 97 ntBASIC2.95□□□□□ -1.94
RNF4P78317 RNA5SP344-201ENST00000411081 104 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms