Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AP000567.1-201ENST00000406413 156 ntBASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 Z98941.1-201ENST00000407764 100 ntBASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 AC063976.3-201ENST00000426849 329 ntBASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 RNU4-35P-201ENST00000362588 141 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-1209P-201ENST00000363655 107 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 Y_RNA.796-201ENST00000364268 102 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 Y_RNA.799-201ENST00000364992 102 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 Y_RNA.510-201ENST00000384511 114 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 AL138878.1-201ENST00000405131 347 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 CALM2P4-201ENST00000430810 426 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 AC245102.2-201ENST00000448956 180 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6ATAC13P-201ENST00000516152 131 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 SNORA31.21-201ENST00000517180 77 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 EIF4BP1-201ENST00000554881 351 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 AC103810.1-201ENST00000579873 453 ntBASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SH3RF1Q7Z6J0 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 Y_RNA.49-201ENST00000362714 112 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-438P-201ENST00000365561 103 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-1235P-201ENST00000384559 107 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 MIR562-201ENST00000384894 95 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 RNA5SP136-201ENST00000410906 107 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 RPL30P4-201ENST00000429309 333 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 TRBV25OR9-2-201ENST00000438417 374 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 AL445687.1-201ENST00000439946 251 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 RPS4XP11-201ENST00000446897 772 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-498P-201ENST00000459468 107 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-109P-201ENST00000516364 107 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-184P-201ENST00000516514 107 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-504P-201ENST00000516568 104 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 AC026333.2-201ENST00000542164 106 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 AC011604.1-201ENST00000545978 196 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 MIR4765-201ENST00000585007 77 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 AL035470.1-201ENST00000622571 220 ntBASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.03□□□□□ -1.76
SH3RF1Q7Z6J0 OTUD4P1-201ENST00000237841 3067 ntBASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 RNU6-228P-201ENST00000362700 106 ntBASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 MIR767-201ENST00000390228 109 ntBASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 RNA5SP38-201ENST00000410750 119 ntBASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 RNU2-32P-201ENST00000411193 191 ntBASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 RNA5SP112-201ENST00000515937 99 ntBASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 Y_RNA.818-201ENST00000618813 71 ntBASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 AC022149.2-201ENST00000621061 203 ntBASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 AC006111.3-201ENST00000622137 383 ntBASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.02□□□□□ -1.77
SH3RF1Q7Z6J0 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 MIR494-201ENST00000349529 81 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 SNORD6-201ENST00000365444 73 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 RNU6-418P-201ENST00000384035 107 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 Y_RNA.486-201ENST00000384398 107 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 MIR590-201ENST00000385008 97 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 RNA5SP225-201ENST00000410874 135 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 AC007064.1-201ENST00000412238 351 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 MTATP8P2-201ENST00000435212 202 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 COX6CP6-201ENST00000490840 228 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 RNU7-172P-201ENST00000517125 64 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 MIR3129-201ENST00000581095 76 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 AC002064.3-201ENST00000623448 346 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 AL136360.1-201ENST00000503377 1900 ntBASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SH3RF1Q7Z6J0 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 RNA5SP374-201ENST00000362939 125 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 RNY1P10-201ENST00000363268 113 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 PHBP14-201ENST00000512887 367 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 AC097462.1-201ENST00000514125 324 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 RNU6-113P-201ENST00000516653 101 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 AC007751.1-201ENST00000529260 376 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 MIR4438-201ENST00000585271 93 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 SNORD115-40-201ENST00000606510 82 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 MALAT1.1-201ENST00000618249 95 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 U7.8-201ENST00000619968 63 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 MIR2052-201ENST00000636055 55 ntBASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
SH3RF1Q7Z6J0 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 RNU1-22P-201ENST00000363334 158 ntBASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 RNU1-105P-201ENST00000363470 161 ntBASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 Y_RNA.466-201ENST00000384294 113 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 150.7 ms