Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 AC005326.1-201ENST00000429197 123 ntBASIC3.15□□□□□ -1.91
CCNFP41002 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.15□□□□□ -1.91
CCNFP41002 AL121914.1-201ENST00000450188 156 ntBASIC3.15□□□□□ -1.91
CCNFP41002 HSPE1P13-201ENST00000451143 297 ntBASIC3.15□□□□□ -1.91
CCNFP41002 RNU6-498P-201ENST00000459468 107 ntBASIC3.15□□□□□ -1.91
CCNFP41002 RN7SL807P-201ENST00000470923 297 ntBASIC3.15□□□□□ -1.91
CCNFP41002 RPL23AP54-201ENST00000495129 419 ntBASIC3.15□□□□□ -1.91
CCNFP41002 SNORA48.11-201ENST00000517015 89 ntBASIC3.15□□□□□ -1.91
CCNFP41002 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.15□□□□□ -1.91
CCNFP41002 AC090616.3-201ENST00000582184 217 ntBASIC3.15□□□□□ -1.91
CCNFP41002 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.15□□□□□ -1.91
CCNFP41002 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.15□□□□□ -1.91
CCNFP41002 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
CCNFP41002 AC093010.3-201ENST00000570269 15214 ntBASIC3.14□□□□□ -1.91
CCNFP41002 SNORD114-7-201ENST00000362520 77 ntBASIC3.14□□□□□ -1.91
CCNFP41002 RNU4-13P-201ENST00000364019 141 ntBASIC3.14□□□□□ -1.91
CCNFP41002 RNU6-1240P-201ENST00000365155 104 ntBASIC3.14□□□□□ -1.91
CCNFP41002 Y_RNA.488-201ENST00000384403 102 ntBASIC3.14□□□□□ -1.91
CCNFP41002 MIR526A2-201ENST00000390198 65 ntBASIC3.14□□□□□ -1.91
CCNFP41002 RNA5SP344-201ENST00000411081 104 ntBASIC3.14□□□□□ -1.91
CCNFP41002 AC003685.2-201ENST00000422795 395 ntBASIC3.14□□□□□ -1.91
CCNFP41002 AL445687.1-201ENST00000439946 251 ntBASIC3.14□□□□□ -1.91
CCNFP41002 AC005840.1-201ENST00000498412 377 ntBASIC3.14□□□□□ -1.91
CCNFP41002 RN7SKP43-201ENST00000516173 320 ntBASIC3.14□□□□□ -1.91
CCNFP41002 SNORD116-25-201ENST00000516517 92 ntBASIC3.14□□□□□ -1.91
CCNFP41002 AC109810.1-201ENST00000534066 224 ntBASIC3.14□□□□□ -1.91
CCNFP41002 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.14□□□□□ -1.91
CCNFP41002 AC005972.2-201ENST00000604690 348 ntBASIC3.14□□□□□ -1.91
CCNFP41002 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCNFP41002 AL159152.1-201ENST00000635019 2587 ntBASIC3.13□□□□□ -1.91
CCNFP41002 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCNFP41002 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCNFP41002 Y_RNA.229-201ENST00000364347 113 ntBASIC3.13□□□□□ -1.91
CCNFP41002 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCNFP41002 Y_RNA.400-201ENST00000383963 111 ntBASIC3.13□□□□□ -1.91
CCNFP41002 RNVU1-14-201ENST00000384770 164 ntBASIC3.13□□□□□ -1.91
CCNFP41002 MIR561-201ENST00000385216 97 ntBASIC3.13□□□□□ -1.91
CCNFP41002 MIR616-201ENST00000385293 97 ntBASIC3.13□□□□□ -1.91
CCNFP41002 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CCNFP41002 RNU6-239P-201ENST00000390990 99 ntBASIC3.13□□□□□ -1.91
CCNFP41002 RNA5SP120-201ENST00000410900 112 ntBASIC3.13□□□□□ -1.91
CCNFP41002 AC006461.1-201ENST00000412637 326 ntBASIC3.13□□□□□ -1.91
CCNFP41002 BMS1P22-201ENST00000414726 313 ntBASIC3.13□□□□□ -1.91
CCNFP41002 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.13□□□□□ -1.91
CCNFP41002 AC010531.2-201ENST00000465012 153 ntBASIC3.13□□□□□ -1.91
CCNFP41002 AC091826.1-201ENST00000514065 313 ntBASIC3.13□□□□□ -1.91
CCNFP41002 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.13□□□□□ -1.91
CCNFP41002 MIR4431-201ENST00000579990 94 ntBASIC3.13□□□□□ -1.91
CCNFP41002 MIR4298-201ENST00000584380 73 ntBASIC3.13□□□□□ -1.91
CCNFP41002 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.13□□□□□ -1.91
CCNFP41002 AC091895.1-201ENST00000624494 256 ntBASIC3.13□□□□□ -1.91
CCNFP41002 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.13□□□□□ -1.91
CCNFP41002 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCNFP41002 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CCNFP41002 RNU6-818P-201ENST00000364837 108 ntBASIC3.12□□□□□ -1.91
CCNFP41002 Y_RNA.497-201ENST00000384447 98 ntBASIC3.12□□□□□ -1.91
CCNFP41002 AL606845.1-201ENST00000404881 255 ntBASIC3.12□□□□□ -1.91
CCNFP41002 AL031121.1-201ENST00000406553 254 ntBASIC3.12□□□□□ -1.91
CCNFP41002 MIR1253-201ENST00000408273 105 ntBASIC3.12□□□□□ -1.91
CCNFP41002 RNA5SP511-201ENST00000410487 115 ntBASIC3.12□□□□□ -1.91
CCNFP41002 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.12□□□□□ -1.91
CCNFP41002 SNORA59A-201ENST00000459326 152 ntBASIC3.12□□□□□ -1.91
CCNFP41002 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.12□□□□□ -1.91
CCNFP41002 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.12□□□□□ -1.91
CCNFP41002 AC107027.2-201ENST00000512197 115 ntBASIC3.12□□□□□ -1.91
CCNFP41002 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.12□□□□□ -1.91
CCNFP41002 MIR5680-201ENST00000577577 84 ntBASIC3.12□□□□□ -1.91
CCNFP41002 Y_RNA.778-201ENST00000620203 90 ntBASIC3.12□□□□□ -1.91
CCNFP41002 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCNFP41002 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CCNFP41002 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCNFP41002 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.11□□□□□ -1.91
CCNFP41002 Y_RNA.215-201ENST00000364204 112 ntBASIC3.11□□□□□ -1.91
CCNFP41002 RNU6-1180P-201ENST00000364935 107 ntBASIC3.11□□□□□ -1.91
CCNFP41002 AL135786.1-201ENST00000415892 214 ntBASIC3.11□□□□□ -1.91
CCNFP41002 AC016909.1-201ENST00000415916 166 ntBASIC3.11□□□□□ -1.91
CCNFP41002 AC092427.1-202ENST00000430569 476 ntBASIC3.11□□□□□ -1.91
CCNFP41002 SNORA4.4-201ENST00000515921 135 ntBASIC3.11□□□□□ -1.91
CCNFP41002 RNA5SP76-201ENST00000516277 87 ntBASIC3.11□□□□□ -1.91
CCNFP41002 AC007536.1-201ENST00000533382 349 ntBASIC3.11□□□□□ -1.91
CCNFP41002 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.11□□□□□ -1.91
CCNFP41002 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.11□□□□□ -1.91
CCNFP41002 AP003357.1-201ENST00000604497 148 ntBASIC3.11□□□□□ -1.91
CCNFP41002 AC004832.5-201ENST00000608677 401 ntBASIC3.11□□□□□ -1.91
CCNFP41002 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.11□□□□□ -1.91
CCNFP41002 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.11□□□□□ -1.91
CCNFP41002 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCNFP41002 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CCNFP41002 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.11□□□□□ -1.91
CCNFP41002 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCNFP41002 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCNFP41002 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CCNFP41002 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCNFP41002 MIR15B-201ENST00000385045 98 ntBASIC3.1□□□□□ -1.91
CCNFP41002 RNU6-131P-201ENST00000391144 107 ntBASIC3.1□□□□□ -1.91
CCNFP41002 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.1□□□□□ -1.91
CCNFP41002 AP004217.1-201ENST00000480579 346 ntBASIC3.1□□□□□ -1.91
CCNFP41002 RN7SL20P-201ENST00000488827 297 ntBASIC3.1□□□□□ -1.91
CCNFP41002 RNA5SP272-201ENST00000516095 111 ntBASIC3.1□□□□□ -1.91
CCNFP41002 RNU7-116P-201ENST00000516940 62 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms