Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR548A2-201ENST00000384956 97 ntBASIC3.54□□□□□ -1.84
MSX1P28360 SNORA11.2-201ENST00000408318 127 ntBASIC3.54□□□□□ -1.84
MSX1P28360 RPS3AP1-201ENST00000413190 320 ntBASIC3.54□□□□□ -1.84
MSX1P28360 SNRPGP13-201ENST00000442212 177 ntBASIC3.54□□□□□ -1.84
MSX1P28360 AP001486.1-201ENST00000463339 476 ntBASIC3.54□□□□□ -1.84
MSX1P28360 SNRPGP3-201ENST00000469405 227 ntBASIC3.54□□□□□ -1.84
MSX1P28360 AC021205.2-201ENST00000480069 347 ntBASIC3.54□□□□□ -1.84
MSX1P28360 RNU6-240P-201ENST00000516098 97 ntBASIC3.54□□□□□ -1.84
MSX1P28360 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.54□□□□□ -1.84
MSX1P28360 SCARNA13-201ENST00000516672 275 ntBASIC3.54□□□□□ -1.84
MSX1P28360 AC068657.1-201ENST00000520807 306 ntBASIC3.54□□□□□ -1.84
MSX1P28360 AC073413.2-201ENST00000604332 360 ntBASIC3.54□□□□□ -1.84
MSX1P28360 AC019176.2-201ENST00000611579 315 ntBASIC3.54□□□□□ -1.84
MSX1P28360 U2.20-201ENST00000613956 192 ntBASIC3.54□□□□□ -1.84
MSX1P28360 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
MSX1P28360 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.54□□□□□ -1.84
MSX1P28360 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.54□□□□□ -1.84
MSX1P28360 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSX1P28360 ZNF962P-201ENST00000443465 3140 ntBASIC3.53□□□□□ -1.84
MSX1P28360 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSX1P28360 Y_RNA.253-201ENST00000364562 112 ntBASIC3.53□□□□□ -1.84
MSX1P28360 MIR483-201ENST00000385070 76 ntBASIC3.53□□□□□ -1.84
MSX1P28360 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
MSX1P28360 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
MSX1P28360 RN7SL323P-201ENST00000494712 295 ntBASIC3.53□□□□□ -1.84
MSX1P28360 SNORA4.4-201ENST00000515921 135 ntBASIC3.53□□□□□ -1.84
MSX1P28360 RNU6-1231P-201ENST00000517185 103 ntBASIC3.53□□□□□ -1.84
MSX1P28360 IGKV3-31-201ENST00000523109 329 ntBASIC3.53□□□□□ -1.84
MSX1P28360 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.53□□□□□ -1.84
MSX1P28360 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.53□□□□□ -1.84
MSX1P28360 MIR5197-201ENST00000583721 112 ntBASIC3.53□□□□□ -1.84
MSX1P28360 AC062037.1-201ENST00000605302 128 ntBASIC3.53□□□□□ -1.84
MSX1P28360 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.53□□□□□ -1.84
MSX1P28360 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSX1P28360 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
MSX1P28360 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.53□□□□□ -1.84
MSX1P28360 AL353746.1-201ENST00000566293 6881 ntBASIC3.53□□□□□ -1.85
MSX1P28360 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
MSX1P28360 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
MSX1P28360 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.52□□□□□ -1.85
MSX1P28360 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
MSX1P28360 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
MSX1P28360 RNU1-96P-201ENST00000364163 162 ntBASIC3.52□□□□□ -1.85
MSX1P28360 Y_RNA.213-201ENST00000364178 111 ntBASIC3.52□□□□□ -1.85
MSX1P28360 MIR30B-201ENST00000384850 88 ntBASIC3.52□□□□□ -1.85
MSX1P28360 MIR590-201ENST00000385008 97 ntBASIC3.52□□□□□ -1.85
MSX1P28360 RNU6-1077P-201ENST00000410506 102 ntBASIC3.52□□□□□ -1.85
MSX1P28360 AC009414.1-201ENST00000427200 443 ntBASIC3.52□□□□□ -1.85
MSX1P28360 MIR5009-201ENST00000578736 100 ntBASIC3.52□□□□□ -1.85
MSX1P28360 AC087685.1-201ENST00000587507 141 ntBASIC3.52□□□□□ -1.85
MSX1P28360 AL442128.1-201ENST00000615151 90 ntBASIC3.52□□□□□ -1.85
MSX1P28360 Y_RNA.818-201ENST00000618813 71 ntBASIC3.52□□□□□ -1.85
MSX1P28360 AC009093.8-201ENST00000641769 292 ntBASIC3.52□□□□□ -1.85
MSX1P28360 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.52□□□□□ -1.85
MSX1P28360 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.51□□□□□ -1.85
MSX1P28360 Y_RNA.220-201ENST00000364244 109 ntBASIC3.51□□□□□ -1.85
MSX1P28360 MIR759-201ENST00000390224 91 ntBASIC3.51□□□□□ -1.85
MSX1P28360 RNU11-5P-201ENST00000391216 129 ntBASIC3.51□□□□□ -1.85
MSX1P28360 AC233266.1-201ENST00000454518 96 ntBASIC3.51□□□□□ -1.85
MSX1P28360 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.51□□□□□ -1.85
MSX1P28360 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.51□□□□□ -1.85
MSX1P28360 SCARNA17.1-201ENST00000516211 143 ntBASIC3.51□□□□□ -1.85
MSX1P28360 SCARNA17.2-201ENST00000516334 143 ntBASIC3.51□□□□□ -1.85
MSX1P28360 RNU1-95P-201ENST00000516357 160 ntBASIC3.51□□□□□ -1.85
MSX1P28360 RNU6-109P-201ENST00000516364 107 ntBASIC3.51□□□□□ -1.85
MSX1P28360 RNU6-184P-201ENST00000516514 107 ntBASIC3.51□□□□□ -1.85
MSX1P28360 RNU1-128P-201ENST00000516704 160 ntBASIC3.51□□□□□ -1.85
MSX1P28360 RNU6-856P-201ENST00000516959 98 ntBASIC3.51□□□□□ -1.85
MSX1P28360 AC007179.3-201ENST00000604976 235 ntBASIC3.51□□□□□ -1.85
MSX1P28360 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.51□□□□□ -1.85
MSX1P28360 AC242852.1-201ENST00000612151 96 ntBASIC3.51□□□□□ -1.85
MSX1P28360 SCARNA17.4-201ENST00000614296 143 ntBASIC3.51□□□□□ -1.85
MSX1P28360 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.51□□□□□ -1.85
MSX1P28360 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.51□□□□□ -1.85
MSX1P28360 XIST_intron.1-201ENST00000619444 68 ntBASIC3.51□□□□□ -1.85
MSX1P28360 AC244015.1-201ENST00000622301 99 ntBASIC3.51□□□□□ -1.85
MSX1P28360 MIR376A2-201ENST00000636782 80 ntBASIC3.51□□□□□ -1.85
MSX1P28360 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.51□□□□□ -1.85
MSX1P28360 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.51□□□□□ -1.85
MSX1P28360 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
MSX1P28360 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
MSX1P28360 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.51□□□□□ -1.85
MSX1P28360 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.51□□□□□ -1.85
MSX1P28360 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.51□□□□□ -1.85
MSX1P28360 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.51□□□□□ -1.85
MSX1P28360 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
MSX1P28360 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
MSX1P28360 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
MSX1P28360 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.5□□□□□ -1.85
MSX1P28360 Y_RNA.78-201ENST00000362970 110 ntBASIC3.5□□□□□ -1.85
MSX1P28360 RNU6-414P-201ENST00000363705 104 ntBASIC3.5□□□□□ -1.85
MSX1P28360 RNA5SP173-201ENST00000364857 136 ntBASIC3.5□□□□□ -1.85
MSX1P28360 SNORA5A-201ENST00000384111 134 ntBASIC3.5□□□□□ -1.85
MSX1P28360 MIR518F-201ENST00000384973 87 ntBASIC3.5□□□□□ -1.85
MSX1P28360 RNU6-1275P-201ENST00000391087 107 ntBASIC3.5□□□□□ -1.85
MSX1P28360 AP000567.1-201ENST00000406413 156 ntBASIC3.5□□□□□ -1.85
MSX1P28360 AL139247.1-201ENST00000422768 325 ntBASIC3.5□□□□□ -1.85
MSX1P28360 AC110768.1-201ENST00000509222 400 ntBASIC3.5□□□□□ -1.85
MSX1P28360 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.5□□□□□ -1.85
MSX1P28360 RNU6-158P-201ENST00000517104 100 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms