Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 DNAJC19P2-201ENST00000593340 302 ntBASIC3.74□□□□□ -1.81
RFX1P22670 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
RFX1P22670 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
RFX1P22670 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
RFX1P22670 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
RFX1P22670 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
RFX1P22670 RNU4-13P-201ENST00000364019 141 ntBASIC3.73□□□□□ -1.81
RFX1P22670 RNA5SP125-201ENST00000364843 120 ntBASIC3.73□□□□□ -1.81
RFX1P22670 RNU6-728P-201ENST00000365375 104 ntBASIC3.73□□□□□ -1.81
RFX1P22670 SNORA26.7-201ENST00000391288 122 ntBASIC3.73□□□□□ -1.81
RFX1P22670 AC060773.1-201ENST00000421698 310 ntBASIC3.73□□□□□ -1.81
RFX1P22670 AL445687.1-201ENST00000439946 251 ntBASIC3.73□□□□□ -1.81
RFX1P22670 AC010401.1-201ENST00000463867 348 ntBASIC3.73□□□□□ -1.81
RFX1P22670 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.73□□□□□ -1.81
RFX1P22670 RNU6-1231P-201ENST00000517185 103 ntBASIC3.73□□□□□ -1.81
RFX1P22670 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.73□□□□□ -1.81
RFX1P22670 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.73□□□□□ -1.81
RFX1P22670 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
RFX1P22670 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.73□□□□□ -1.81
RFX1P22670 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.73□□□□□ -1.81
RFX1P22670 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
RFX1P22670 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
RFX1P22670 Y_RNA.99-201ENST00000363138 105 ntBASIC3.72□□□□□ -1.81
RFX1P22670 RNU1-96P-201ENST00000364163 162 ntBASIC3.72□□□□□ -1.81
RFX1P22670 RNU6-136P-201ENST00000384663 107 ntBASIC3.72□□□□□ -1.81
RFX1P22670 MIR569-201ENST00000385228 96 ntBASIC3.72□□□□□ -1.81
RFX1P22670 RNU11-5P-201ENST00000391216 129 ntBASIC3.72□□□□□ -1.81
RFX1P22670 AL512604.1-201ENST00000404812 257 ntBASIC3.72□□□□□ -1.81
RFX1P22670 MIR1253-201ENST00000408273 105 ntBASIC3.72□□□□□ -1.81
RFX1P22670 AC006461.1-201ENST00000412637 326 ntBASIC3.72□□□□□ -1.81
RFX1P22670 AL353689.1-201ENST00000438895 199 ntBASIC3.72□□□□□ -1.81
RFX1P22670 SNORA70.18-201ENST00000516696 98 ntBASIC3.72□□□□□ -1.81
RFX1P22670 RNU7-172P-201ENST00000517125 64 ntBASIC3.72□□□□□ -1.81
RFX1P22670 MIR5047-201ENST00000579212 100 ntBASIC3.72□□□□□ -1.81
RFX1P22670 MIR548X2-201ENST00000579776 100 ntBASIC3.72□□□□□ -1.81
RFX1P22670 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
RFX1P22670 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
RFX1P22670 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
RFX1P22670 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
RFX1P22670 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.71□□□□□ -1.82
RFX1P22670 MIR30E-201ENST00000362104 92 ntBASIC3.71□□□□□ -1.82
RFX1P22670 RNU4-35P-201ENST00000362588 141 ntBASIC3.71□□□□□ -1.82
RFX1P22670 RNU6-643P-201ENST00000384018 107 ntBASIC3.71□□□□□ -1.82
RFX1P22670 RNU4-43P-201ENST00000410628 137 ntBASIC3.71□□□□□ -1.82
RFX1P22670 RN7SKP101-201ENST00000411376 320 ntBASIC3.71□□□□□ -1.82
RFX1P22670 COTL1P1-201ENST00000422309 375 ntBASIC3.71□□□□□ -1.82
RFX1P22670 AC063976.3-201ENST00000426849 329 ntBASIC3.71□□□□□ -1.82
RFX1P22670 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.71□□□□□ -1.82
RFX1P22670 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.71□□□□□ -1.82
RFX1P22670 RNU1-131P-201ENST00000458943 161 ntBASIC3.71□□□□□ -1.82
RFX1P22670 RNU6-426P-201ENST00000516464 97 ntBASIC3.71□□□□□ -1.82
RFX1P22670 LARP7P3-201ENST00000579888 337 ntBASIC3.71□□□□□ -1.82
RFX1P22670 U4.6-201ENST00000621618 127 ntBASIC3.71□□□□□ -1.82
RFX1P22670 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.71□□□□□ -1.82
RFX1P22670 AC006386.2-201ENST00000624491 75 ntBASIC3.71□□□□□ -1.82
RFX1P22670 AC091895.1-201ENST00000624494 256 ntBASIC3.71□□□□□ -1.82
RFX1P22670 AC012005.1-201ENST00000624575 75 ntBASIC3.71□□□□□ -1.82
RFX1P22670 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.71□□□□□ -1.82
RFX1P22670 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
RFX1P22670 RNU4-11P-201ENST00000365287 132 ntBASIC3.7□□□□□ -1.82
RFX1P22670 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC3.7□□□□□ -1.82
RFX1P22670 TRIAP1P1-201ENST00000427062 225 ntBASIC3.7□□□□□ -1.82
RFX1P22670 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.7□□□□□ -1.82
RFX1P22670 MIR548AI-201ENST00000579940 88 ntBASIC3.7□□□□□ -1.82
RFX1P22670 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.7□□□□□ -1.82
RFX1P22670 AL353149.1-201ENST00000610667 244 ntBASIC3.7□□□□□ -1.82
RFX1P22670 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.7□□□□□ -1.82
RFX1P22670 AL021368.2-201ENST00000606125 5352 ntBASIC3.7□□□□□ -1.82
RFX1P22670 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
RFX1P22670 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.69□□□□□ -1.82
RFX1P22670 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.69□□□□□ -1.82
RFX1P22670 AC011406.1-201ENST00000512440 370 ntBASIC3.69□□□□□ -1.82
RFX1P22670 MIR2681-201ENST00000581814 105 ntBASIC3.69□□□□□ -1.82
RFX1P22670 AL021707.8-201ENST00000609428 183 ntBASIC3.69□□□□□ -1.82
RFX1P22670 MIR3658-201ENST00000636291 56 ntBASIC3.69□□□□□ -1.82
RFX1P22670 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
RFX1P22670 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.69□□□□□ -1.82
RFX1P22670 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
RFX1P22670 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.68□□□□□ -1.82
RFX1P22670 RNU4-41P-201ENST00000364426 143 ntBASIC3.68□□□□□ -1.82
RFX1P22670 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
RFX1P22670 RNU6-1117P-201ENST00000384525 104 ntBASIC3.68□□□□□ -1.82
RFX1P22670 RNU6-959P-201ENST00000384671 107 ntBASIC3.68□□□□□ -1.82
RFX1P22670 Y_RNA.586-201ENST00000391146 98 ntBASIC3.68□□□□□ -1.82
RFX1P22670 RN7SKP284-201ENST00000411002 343 ntBASIC3.68□□□□□ -1.82
RFX1P22670 RNU2-55P-201ENST00000411146 174 ntBASIC3.68□□□□□ -1.82
RFX1P22670 EDDM3CP-201ENST00000415977 425 ntBASIC3.68□□□□□ -1.82
RFX1P22670 AC009238.1-201ENST00000442165 424 ntBASIC3.68□□□□□ -1.82
RFX1P22670 AC009237.6-201ENST00000446969 424 ntBASIC3.68□□□□□ -1.82
RFX1P22670 RPS29P21-201ENST00000496272 170 ntBASIC3.68□□□□□ -1.82
RFX1P22670 MIR4325-201ENST00000583049 90 ntBASIC3.68□□□□□ -1.82
RFX1P22670 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
RFX1P22670 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.68□□□□□ -1.82
RFX1P22670 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
RFX1P22670 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
RFX1P22670 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.67□□□□□ -1.82
RFX1P22670 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
RFX1P22670 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.67□□□□□ -1.82
RFX1P22670 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
RFX1P22670 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms