Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNU1-109P-201ENST00000383960 147 ntBASIC3.51□□□□□ -1.85
LIG1P18858 SNORA9-201ENST00000384215 133 ntBASIC3.51□□□□□ -1.85
LIG1P18858 MIR29B2-201ENST00000385055 81 ntBASIC3.51□□□□□ -1.85
LIG1P18858 MIR873-201ENST00000401120 77 ntBASIC3.51□□□□□ -1.85
LIG1P18858 AC092427.1-202ENST00000430569 476 ntBASIC3.51□□□□□ -1.85
LIG1P18858 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.51□□□□□ -1.85
LIG1P18858 RNU6-1211P-201ENST00000459179 105 ntBASIC3.51□□□□□ -1.85
LIG1P18858 RN7SL499P-201ENST00000481141 276 ntBASIC3.51□□□□□ -1.85
LIG1P18858 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.51□□□□□ -1.85
LIG1P18858 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.51□□□□□ -1.85
LIG1P18858 UBL5P2-201ENST00000583788 219 ntBASIC3.51□□□□□ -1.85
LIG1P18858 MIR548AY-201ENST00000617669 107 ntBASIC3.51□□□□□ -1.85
LIG1P18858 AC009487.2-201ENST00000420969 6821 ntBASIC3.51□□□□□ -1.85
LIG1P18858 AC073325.2-201ENST00000339545 159 ntBASIC3.5□□□□□ -1.85
LIG1P18858 RNU6-407P-201ENST00000365280 104 ntBASIC3.5□□□□□ -1.85
LIG1P18858 MIR128-1-201ENST00000384921 82 ntBASIC3.5□□□□□ -1.85
LIG1P18858 MIR181B1-201ENST00000385240 110 ntBASIC3.5□□□□□ -1.85
LIG1P18858 MIR300-201ENST00000401138 83 ntBASIC3.5□□□□□ -1.85
LIG1P18858 RNU4-43P-201ENST00000410628 137 ntBASIC3.5□□□□□ -1.85
LIG1P18858 HSPE1P21-201ENST00000438283 308 ntBASIC3.5□□□□□ -1.85
LIG1P18858 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.5□□□□□ -1.85
LIG1P18858 AP004217.1-201ENST00000480579 346 ntBASIC3.5□□□□□ -1.85
LIG1P18858 RPL36AP21-201ENST00000490372 323 ntBASIC3.5□□□□□ -1.85
LIG1P18858 RNU6-561P-201ENST00000516222 102 ntBASIC3.5□□□□□ -1.85
LIG1P18858 RNU5F-4P-201ENST00000516581 114 ntBASIC3.5□□□□□ -1.85
LIG1P18858 RPPH1-2P-201ENST00000516688 293 ntBASIC3.5□□□□□ -1.85
LIG1P18858 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.5□□□□□ -1.85
LIG1P18858 AL670379.2-201ENST00000604983 252 ntBASIC3.5□□□□□ -1.85
LIG1P18858 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LIG1P18858 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
LIG1P18858 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
LIG1P18858 AL365361.1-201ENST00000566942 3481 ntBASIC3.49□□□□□ -1.85
LIG1P18858 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
LIG1P18858 Y_RNA.124-201ENST00000363339 93 ntBASIC3.49□□□□□ -1.85
LIG1P18858 RNU6-1323P-201ENST00000384025 107 ntBASIC3.49□□□□□ -1.85
LIG1P18858 RNU6-80P-201ENST00000384195 107 ntBASIC3.49□□□□□ -1.85
LIG1P18858 SNORD67-201ENST00000390833 111 ntBASIC3.49□□□□□ -1.85
LIG1P18858 SNORD37.2-201ENST00000391075 66 ntBASIC3.49□□□□□ -1.85
LIG1P18858 AL139095.1-201ENST00000404326 391 ntBASIC3.49□□□□□ -1.85
LIG1P18858 AL355796.1-201ENST00000406706 323 ntBASIC3.49□□□□□ -1.85
LIG1P18858 SNORA36B-201ENST00000410438 131 ntBASIC3.49□□□□□ -1.85
LIG1P18858 AC092991.1-201ENST00000477176 376 ntBASIC3.49□□□□□ -1.85
LIG1P18858 AC117454.1-201ENST00000491120 168 ntBASIC3.49□□□□□ -1.85
LIG1P18858 SNORA74D-201ENST00000516404 141 ntBASIC3.49□□□□□ -1.85
LIG1P18858 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.49□□□□□ -1.85
LIG1P18858 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.49□□□□□ -1.85
LIG1P18858 RPL30P11-203ENST00000598995 310 ntBASIC3.49□□□□□ -1.85
LIG1P18858 YPEL5P2-201ENST00000605553 359 ntBASIC3.49□□□□□ -1.85
LIG1P18858 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.49□□□□□ -1.85
LIG1P18858 AL162274.2-201ENST00000614406 332 ntBASIC3.49□□□□□ -1.85
LIG1P18858 MIR8057-201ENST00000620957 69 ntBASIC3.49□□□□□ -1.85
LIG1P18858 AC007318.2-201ENST00000620999 243 ntBASIC3.49□□□□□ -1.85
LIG1P18858 AP001340.1-201ENST00000624405 217 ntBASIC3.49□□□□□ -1.85
LIG1P18858 MIR6844-201ENST00000637122 62 ntBASIC3.49□□□□□ -1.85
LIG1P18858 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.49□□□□□ -1.85
LIG1P18858 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
LIG1P18858 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LIG1P18858 SNORA20B-201ENST00000384220 132 ntBASIC3.48□□□□□ -1.85
LIG1P18858 MIR483-201ENST00000385070 76 ntBASIC3.48□□□□□ -1.85
LIG1P18858 SNORA48.2-201ENST00000390926 124 ntBASIC3.48□□□□□ -1.85
LIG1P18858 MIR1283-1-201ENST00000408494 87 ntBASIC3.48□□□□□ -1.85
LIG1P18858 RNU6-383P-201ENST00000410864 94 ntBASIC3.48□□□□□ -1.85
LIG1P18858 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.48□□□□□ -1.85
LIG1P18858 Z98742.2-201ENST00000431564 187 ntBASIC3.48□□□□□ -1.85
LIG1P18858 AL121890.1-201ENST00000435457 205 ntBASIC3.48□□□□□ -1.85
LIG1P18858 RNU6-1337P-201ENST00000516525 95 ntBASIC3.48□□□□□ -1.85
LIG1P18858 RNU6-1234P-201ENST00000516877 103 ntBASIC3.48□□□□□ -1.85
LIG1P18858 AP003357.1-201ENST00000604497 148 ntBASIC3.48□□□□□ -1.85
LIG1P18858 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.48□□□□□ -1.85
LIG1P18858 AC068647.2-201ENST00000637380 353 ntBASIC3.48□□□□□ -1.85
LIG1P18858 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LIG1P18858 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LIG1P18858 SNORA27.1-201ENST00000362604 124 ntBASIC3.47□□□□□ -1.85
LIG1P18858 RNU6-271P-201ENST00000363858 105 ntBASIC3.47□□□□□ -1.85
LIG1P18858 RNU6-768P-201ENST00000384683 107 ntBASIC3.47□□□□□ -1.85
LIG1P18858 MIR518C-201ENST00000384822 101 ntBASIC3.47□□□□□ -1.85
LIG1P18858 MIR1278-201ENST00000408753 81 ntBASIC3.47□□□□□ -1.85
LIG1P18858 RNU4-47P-201ENST00000410876 114 ntBASIC3.47□□□□□ -1.85
LIG1P18858 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
LIG1P18858 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC3.47□□□□□ -1.85
LIG1P18858 RN7SL633P-201ENST00000488974 297 ntBASIC3.47□□□□□ -1.85
LIG1P18858 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.47□□□□□ -1.85
LIG1P18858 ZNF702P-202ENST00000434269 1966 ntBASIC3.47□□□□□ -1.85
LIG1P18858 RNU6-834P-201ENST00000362367 110 ntBASIC3.46□□□□□ -1.86
LIG1P18858 Y_RNA.393-201ENST00000383936 102 ntBASIC3.46□□□□□ -1.86
LIG1P18858 RPS29P6-201ENST00000438196 145 ntBASIC3.46□□□□□ -1.86
LIG1P18858 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.46□□□□□ -1.86
LIG1P18858 RPS27P1-201ENST00000450552 247 ntBASIC3.46□□□□□ -1.86
LIG1P18858 RNU7-57P-201ENST00000459540 60 ntBASIC3.46□□□□□ -1.86
LIG1P18858 AC010598.1-201ENST00000510378 103 ntBASIC3.46□□□□□ -1.86
LIG1P18858 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.46□□□□□ -1.86
LIG1P18858 RNU4-57P-201ENST00000515980 135 ntBASIC3.46□□□□□ -1.86
LIG1P18858 RNA5SP341-201ENST00000516261 117 ntBASIC3.46□□□□□ -1.86
LIG1P18858 RNU6-919P-201ENST00000516731 104 ntBASIC3.46□□□□□ -1.86
LIG1P18858 MIR5004-201ENST00000579078 107 ntBASIC3.46□□□□□ -1.86
LIG1P18858 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
LIG1P18858 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
LIG1P18858 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LIG1P18858 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
LIG1P18858 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms