Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 AC068700.1-201ENST00000565862 3754 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 RNU6-820P-201ENST00000384273 107 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 SNORA51.10-201ENST00000384418 136 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 RNU6-763P-201ENST00000390865 106 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 RNU6-1001P-201ENST00000411265 100 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 RPS3AP1-201ENST00000413190 320 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 HSPE1P13-201ENST00000451143 297 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 RN7SKP43-201ENST00000516173 320 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 RNU6-1198P-201ENST00000516904 67 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 AC016256.1-201ENST00000547971 354 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 AP000942.3-201ENST00000603702 160 ntBASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.02□□□□□ -1.77
COL17A1Q9UMD9 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 MIR148B-201ENST00000362252 99 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 RNU6-643P-201ENST00000384018 107 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 RNY1P7-201ENST00000384743 110 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 MIR329-1-201ENST00000385028 80 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 MIR493-201ENST00000385254 89 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 EI24P2-201ENST00000397776 1076 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 VDAC1P3-201ENST00000434069 851 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 HSPE1P21-201ENST00000438283 308 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 AC003982.1-202ENST00000469928 248 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 RNU6-1146P-201ENST00000516282 102 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 RNA5SP468-201ENST00000516782 93 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 MIR5695-201ENST00000579717 85 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 AL391813.1-201ENST00000603098 260 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 Z82209.1-201ENST00000422141 2135 ntBASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL17A1Q9UMD9 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
COL17A1Q9UMD9 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
COL17A1Q9UMD9 RNU6-228P-201ENST00000362700 106 ntBASIC4□□□□□ -1.77
COL17A1Q9UMD9 RNA5SP167-201ENST00000365461 116 ntBASIC4□□□□□ -1.77
COL17A1Q9UMD9 RNU6-281P-201ENST00000384212 103 ntBASIC4□□□□□ -1.77
COL17A1Q9UMD9 Y_RNA.521-201ENST00000384560 114 ntBASIC4□□□□□ -1.77
COL17A1Q9UMD9 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4□□□□□ -1.77
COL17A1Q9UMD9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4□□□□□ -1.77
COL17A1Q9UMD9 AL138963.2-201ENST00000605137 226 ntBASIC4□□□□□ -1.77
COL17A1Q9UMD9 AL442128.1-201ENST00000615151 90 ntBASIC4□□□□□ -1.77
COL17A1Q9UMD9 AC006111.3-201ENST00000622137 383 ntBASIC4□□□□□ -1.77
COL17A1Q9UMD9 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
COL17A1Q9UMD9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL17A1Q9UMD9 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4□□□□□ -1.77
COL17A1Q9UMD9 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 RNU6-600P-201ENST00000362524 99 ntBASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 RNU6-217P-201ENST00000384164 104 ntBASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 RNU6-1145P-201ENST00000384246 107 ntBASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 MIR626-201ENST00000385032 94 ntBASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 NDUFB4P6-201ENST00000436819 366 ntBASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 MIR4498-201ENST00000577599 66 ntBASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 AC134878.1-201ENST00000619901 243 ntBASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 AC048347.1-201ENST00000624621 427 ntBASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
COL17A1Q9UMD9 MIR494-201ENST00000349529 81 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 Y_RNA.24-201ENST00000362508 103 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 Y_RNA.101-201ENST00000363154 102 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 Y_RNA.280-201ENST00000364765 112 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 SNORA72.2-201ENST00000365028 127 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 SNORD58C-201ENST00000365223 64 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNU1-73P-201ENST00000383971 164 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 MIR181A2-201ENST00000384863 110 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 MIR450A2-201ENST00000385022 100 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNA5SP129-201ENST00000410276 118 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 ELOCP21-201ENST00000412558 336 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RPS12P2-201ENST00000439728 269 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 Y_RNA.649-201ENST00000459077 103 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 AP004217.1-201ENST00000480579 346 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNU6-561P-201ENST00000516222 102 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 UBL5P4-201ENST00000562584 236 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms