Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 RNY1P11-201ENST00000363759 113 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 RNU6-1180P-201ENST00000364935 107 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 Y_RNA.353-201ENST00000365440 108 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 DYNLT3P1-201ENST00000378574 347 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 RNU6-418P-201ENST00000384035 107 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 MIR181B1-201ENST00000385240 110 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 AC244505.4-201ENST00000434905 287 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 SSXP5-201ENST00000443473 287 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 AC080013.2-201ENST00000460866 323 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 RNU6-965P-201ENST00000516721 96 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 RNU6-586P-201ENST00000517265 104 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 AC013412.1-201ENST00000610687 192 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 TUG1_4.1-201ENST00000619464 181 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 AL159152.1-201ENST00000635019 2587 ntBASIC3.11□□□□□ -1.91
RNF111Q6ZNA4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 SNORD45.3-201ENST00000363836 72 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 Y_RNA.273-201ENST00000364703 102 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 SNORD31B-201ENST00000364977 69 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 Y_RNA.393-201ENST00000383936 102 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 MIR181A2-201ENST00000384863 110 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 Y_RNA.587-201ENST00000391210 103 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 RN7SKP123-201ENST00000410732 291 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 CST9LP2-201ENST00000437612 320 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 RPL23AP58-201ENST00000440453 469 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 UQCRHP3-201ENST00000451503 251 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 RNU6-437P-201ENST00000459408 95 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 RAC1P5-201ENST00000512182 576 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 RNA5SP76-201ENST00000516277 87 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 RNU2-56P-201ENST00000516826 190 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 RNU7-116P-201ENST00000516940 62 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 MIR3646-201ENST00000578301 84 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
RNF111Q6ZNA4 GABRG2-229ENST00000641017 3628 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 RNU4-41P-201ENST00000364426 143 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 RNU6-215P-201ENST00000365169 102 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 RNY3P5-201ENST00000384127 102 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 RNU6-136P-201ENST00000384663 107 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 MIR218-1-201ENST00000384999 110 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 RNA5SP511-201ENST00000410487 115 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 RPL32P35-201ENST00000415214 394 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 RPL30P4-201ENST00000429309 333 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 AL353705.1-201ENST00000433468 480 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 RNA5SP385-201ENST00000515947 110 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 Y_RNA.686-201ENST00000516548 134 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 AC025647.1-201ENST00000517879 253 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 MIR8058-201ENST00000615737 89 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 SNORA50A-202ENST00000629536 136 ntBASIC3.09□□□□□ -1.91
RNF111Q6ZNA4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
RNF111Q6ZNA4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 MAPK10-362ENST00000641864 4484 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 SNORD46.1-201ENST00000364139 104 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 RNU6-438P-201ENST00000365561 103 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 RNU6-80P-201ENST00000384195 107 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 MIR34B-201ENST00000385076 84 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 AL512604.1-201ENST00000404812 257 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 MIR1278-201ENST00000408753 81 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 RNU4-43P-201ENST00000410628 137 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 RPS12P18-201ENST00000442381 270 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 SNRPGP8-201ENST00000454064 226 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 AC090515.1-201ENST00000465295 476 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 RN7SL601P-201ENST00000471221 293 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 RPL36AP21-201ENST00000490372 323 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 RNU6-948P-201ENST00000516374 107 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 AP001328.1-201ENST00000528550 176 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 uc_338.1-201ENST00000612113 180 ntBASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
RNF111Q6ZNA4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 AC110774.1-201ENST00000623567 2018 ntBASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 RNU4-13P-201ENST00000364019 141 ntBASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 RNU6-1328P-201ENST00000410938 106 ntBASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 AC016925.1-201ENST00000458303 298 ntBASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 RPS27P22-201ENST00000478056 241 ntBASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 RNU4-57P-201ENST00000515980 135 ntBASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 AC015720.1-201ENST00000565251 277 ntBASIC3.07□□□□□ -1.92
RNF111Q6ZNA4 MIR4506-201ENST00000584693 77 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms