| TFE3 | P19532 | PKHD1L1-201 | ENST00000378402 | 13076 nt | APPRIS P1 TSL 1 (best) BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | POSTN-209 | ENST00000541179 | 3214 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | CENPCP1-201 | ENST00000533085 | 2578 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | GNAI3-201 | ENST00000369851 | 27174 nt | APPRIS P1 TSL 1 (best) BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | PHF6-205 | ENST00000625464 | 4434 nt | APPRIS ALT1 TSL 5 BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AL356292.1-201 | ENST00000283110 | 373 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNA5SP387-201 | ENST00000364226 | 106 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | Y_RNA.488-201 | ENST00000384403 | 102 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | Y_RNA.572-201 | ENST00000384757 | 98 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | SNORD67-201 | ENST00000390833 | 111 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR548I2-201 | ENST00000408348 | 149 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | snoU13.22-201 | ENST00000459428 | 104 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | SAR1B-211 | ENST00000509937 | 455 nt | TSL 5 BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | VCAN-AS1-202 | ENST00000513899 | 453 nt | TSL 3 BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | SNORA4.4-201 | ENST00000515921 | 135 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AL355297.2-201 | ENST00000604792 | 129 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | Y_RNA.778-201 | ENST00000620203 | 90 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR3651-201 | ENST00000630427 | 90 nt | BASIC | 3.27 | □□□□□ -1.89 | | |
| TFE3 | P19532 | DDIAS-201 | ENST00000329143 | 3367 nt | APPRIS P2 TSL 1 (best) BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | FPGT-TNNI3K-202 | ENST00000370895 | 7566 nt | TSL 2 BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | ZNF280D-204 | ENST00000558320 | 3666 nt | TSL 1 (best) BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNA5SP374-201 | ENST00000362939 | 125 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU6-743P-201 | ENST00000364151 | 106 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | Y_RNA.229-201 | ENST00000364347 | 113 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | SNORA7.4-201 | ENST00000384249 | 137 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | SNORA54-201 | ENST00000384281 | 123 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR561-201 | ENST00000385216 | 97 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR1289-1-201 | ENST00000408836 | 144 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AL135786.1-201 | ENST00000415892 | 214 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC123900.1-201 | ENST00000420390 | 96 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | EEF1B2P7-201 | ENST00000451177 | 676 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC245047.8-201 | ENST00000456455 | 284 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC010531.2-201 | ENST00000465012 | 153 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RPS27P22-201 | ENST00000478056 | 241 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC093259.1-201 | ENST00000509755 | 300 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU7-121P-201 | ENST00000516604 | 62 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC090155.2-201 | ENST00000518854 | 267 nt | TSL 3 BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC068657.1-201 | ENST00000520807 | 306 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | hsa-mir-4536-1.1-201 | ENST00000636519 | 88 nt | BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | LEPR-202 | ENST00000349533 | 8227 nt | APPRIS P1 TSL 1 (best) BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | UBA5-201 | ENST00000264991 | 2850 nt | TSL 5 BASIC | 3.26 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MAP4K3-205 | ENST00000437545 | 3924 nt | TSL 5 BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | KIAA0825-203 | ENST00000513200 | 4942 nt | TSL 5 BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | ASPN-202 | ENST00000375544 | 2470 nt | APPRIS P1 TSL 1 (best) BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR148B-201 | ENST00000362252 | 99 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU1-23P-201 | ENST00000363361 | 144 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU4-13P-201 | ENST00000364019 | 141 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | Y_RNA.215-201 | ENST00000364204 | 112 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNY3P5-201 | ENST00000384127 | 102 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU4-47P-201 | ENST00000410876 | 114 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | ARF4P2-201 | ENST00000430209 | 526 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MTCO1P44-201 | ENST00000441935 | 243 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AL121914.1-201 | ENST00000450188 | 156 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RN7SL807P-201 | ENST00000470923 | 297 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RPL23AP54-201 | ENST00000495129 | 419 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | SCARNA8-201 | ENST00000515924 | 131 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU6-453P-201 | ENST00000516819 | 85 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR5004-201 | ENST00000579078 | 107 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | PRKACB-219 | ENST00000614872 | 4306 nt | TSL 1 (best) BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MAPK10-362 | ENST00000641864 | 4484 nt | BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | BCLAF1-205 | ENST00000527536 | 5371 nt | TSL 5 BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | DDX60L-207 | ENST00000505890 | 4568 nt | TSL 2 BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RGPD3-202 | ENST00000409886 | 5594 nt | APPRIS P2 TSL 1 (best) BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | CHD1-201 | ENST00000284049 | 6457 nt | APPRIS P1 TSL 1 (best) BASIC | 3.25 | □□□□□ -1.89 | | |
| TFE3 | P19532 | CYLC2-202 | ENST00000487798 | 2053 nt | APPRIS P1 TSL 5 BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | CEP57-213 | ENST00000541150 | 2911 nt | APPRIS ALT2 TSL 5 BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | ZNF280C-201 | ENST00000370978 | 4634 nt | APPRIS P1 TSL 1 (best) BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU6-151P-201 | ENST00000364158 | 107 nt | BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | Y_RNA.332-201 | ENST00000365271 | 113 nt | BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | Y_RNA.337-201 | ENST00000365312 | 102 nt | BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU6-81P-201 | ENST00000365608 | 104 nt | BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR181A2-201 | ENST00000384863 | 110 nt | BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | SNORA11.1-201 | ENST00000408133 | 129 nt | BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC016909.1-201 | ENST00000415916 | 166 nt | BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNA5SP217-201 | ENST00000515959 | 91 nt | BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | PRELID2P1-201 | ENST00000552837 | 301 nt | BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC118755.2-201 | ENST00000584676 | 212 nt | TSL 3 BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AL357054.2-201 | ENST00000607644 | 423 nt | TSL 5 BASIC | 3.24 | □□□□□ -1.89 | | |
| TFE3 | P19532 | CACNB4-222 | ENST00000636350 | 7654 nt | TSL 5 BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU6-728P-201 | ENST00000365375 | 104 nt | BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MINDY3-202 | ENST00000378036 | 2452 nt | TSL 2 BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | Y_RNA.497-201 | ENST00000384447 | 98 nt | BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AL606845.1-201 | ENST00000404881 | 255 nt | BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU6-383P-201 | ENST00000410864 | 94 nt | BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC006028.1-201 | ENST00000438379 | 402 nt | BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | LINC02534-201 | ENST00000446525 | 283 nt | TSL 3 BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU6-437P-201 | ENST00000459408 | 95 nt | BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR548AI-201 | ENST00000579940 | 88 nt | BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC090616.3-201 | ENST00000582184 | 217 nt | BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | ZBTB20-201 | ENST00000357258 | 27125 nt | APPRIS P1 TSL 1 (best) BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | CENPJ-205 | ENST00000545981 | 4299 nt | TSL 2 BASIC | 3.23 | □□□□□ -1.89 | | |
| TFE3 | P19532 | FAM214A-204 | ENST00000546305 | 3697 nt | TSL 2 BASIC | 3.22 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC073325.2-201 | ENST00000339545 | 159 nt | BASIC | 3.22 | □□□□□ -1.89 | | |
| TFE3 | P19532 | RNU6-674P-201 | ENST00000363831 | 107 nt | BASIC | 3.22 | □□□□□ -1.89 | | |
| TFE3 | P19532 | Y_RNA.333-201 | ENST00000365274 | 102 nt | BASIC | 3.22 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR15B-201 | ENST00000385045 | 98 nt | BASIC | 3.22 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AL512604.1-201 | ENST00000404812 | 257 nt | BASIC | 3.22 | □□□□□ -1.89 | | |
| TFE3 | P19532 | MIR1253-201 | ENST00000408273 | 105 nt | BASIC | 3.22 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AL365277.2-201 | ENST00000415255 | 551 nt | TSL 3 BASIC | 3.22 | □□□□□ -1.89 | | |
| TFE3 | P19532 | AC003685.2-201 | ENST00000422795 | 395 nt | BASIC | 3.22 | □□□□□ -1.89 | | |