Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR490-201ENST00000384865 128 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 U6atac.2-201ENST00000408644 118 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 Y_RNA.622-201ENST00000411091 108 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 AC009414.1-201ENST00000427200 443 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 AC023449.1-201ENST00000454464 154 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 AC008155.2-201ENST00000464337 397 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 AC021205.2-201ENST00000480069 347 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 YWHAEP4-201ENST00000505390 198 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 MIR449C-201ENST00000516047 92 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 SNORD59.2-201ENST00000516873 68 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 NDUFB9P3-201ENST00000521269 501 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 AC015720.1-201ENST00000565251 277 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 MIR4425-201ENST00000580572 84 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 AC120024.3-201ENST00000603167 156 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 AL049781.1-201ENST00000623195 3585 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-438P-201ENST00000365561 103 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-484P-201ENST00000384016 107 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-44P-201ENST00000384045 107 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 MIR200C-201ENST00000384980 68 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 Y_RNA.587-201ENST00000391210 103 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 SNORA26-201ENST00000391286 122 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 AC063976.3-201ENST00000426849 329 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 RPL30P4-201ENST00000429309 333 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-1299P-201ENST00000516316 100 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 RMST_8.1-201ENST00000610287 165 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 AC096577.2-201ENST00000611455 153 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 U6.98-201ENST00000637157 84 ntBASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
UBE3DQ7Z6J8 AC091564.4-201ENST00000533934 2194 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 RNU1-72P-201ENST00000362976 153 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 MIR184-201ENST00000384962 84 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 FCF1P8-201ENST00000510322 597 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 RAC1P5-201ENST00000512182 576 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 SCARNA17.1-201ENST00000516211 143 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 SCARNA17.2-201ENST00000516334 143 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 AC097639.2-201ENST00000603159 172 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 SCARNA17.4-201ENST00000614296 143 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 UCA1.1-201ENST00000620952 75 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 AC110079.1-202ENST00000635213 138 ntBASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
UBE3DQ7Z6J8 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
UBE3DQ7Z6J8 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.21□□□□□ -1.89
UBE3DQ7Z6J8 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 Y_RNA.120-201ENST00000363304 110 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-978P-201ENST00000364371 103 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-153P-201ENST00000364422 104 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-1064P-201ENST00000410626 104 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 RNU2-52P-201ENST00000410680 190 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 AC009969.1-201ENST00000438726 172 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 AL357134.1-201ENST00000445848 426 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 AC016717.1-201ENST00000448918 286 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 RN7SL293P-201ENST00000481765 281 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 CYCSP26-201ENST00000534107 320 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 MIR4444-1-201ENST00000581696 74 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 MIR4444-2-201ENST00000584390 74 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 U3.45-201ENST00000607547 219 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 MAPK10-322ENST00000641485 4530 ntBASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-1082P-201ENST00000364574 107 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 MIR181A2-201ENST00000384863 110 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 RNA5SP511-201ENST00000410487 115 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 RPL39P40-201ENST00000445481 146 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 RPS27P22-201ENST00000478056 241 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 MRPS36P2-201ENST00000512569 299 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 PHBP14-201ENST00000512887 367 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 SNORD77.4-201ENST00000516158 81 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 Y_RNA.692-201ENST00000516627 105 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 MIR4662B-201ENST00000579498 81 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 AC090115.4-201ENST00000609970 188 ntBASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 uc_338.4-201ENST00000616635 176 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 196.6 ms