Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR887-201ENST00000401258 79 ntBASIC2.86□□□□□ -1.95
MSX2P35548 AL590004.2-201ENST00000404787 371 ntBASIC2.86□□□□□ -1.95
MSX2P35548 AL355497.1-201ENST00000406262 551 ntBASIC2.86□□□□□ -1.95
MSX2P35548 RNU6-710P-201ENST00000410424 105 ntBASIC2.86□□□□□ -1.95
MSX2P35548 RNA5SP344-201ENST00000411081 104 ntBASIC2.86□□□□□ -1.95
MSX2P35548 EBAG9P1-201ENST00000418955 543 ntBASIC2.86□□□□□ -1.95
MSX2P35548 RPL36AP48-201ENST00000485521 314 ntBASIC2.86□□□□□ -1.95
MSX2P35548 Y_RNA.797-201ENST00000515977 94 ntBASIC2.86□□□□□ -1.95
MSX2P35548 RNU7-121P-201ENST00000516604 62 ntBASIC2.86□□□□□ -1.95
MSX2P35548 HSPE1P18-201ENST00000517602 280 ntBASIC2.86□□□□□ -1.95
MSX2P35548 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.86□□□□□ -1.95
MSX2P35548 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.86□□□□□ -1.95
MSX2P35548 AC090616.3-201ENST00000582184 217 ntBASIC2.86□□□□□ -1.95
MSX2P35548 AC069294.1-201ENST00000608397 350 ntBASIC2.86□□□□□ -1.95
MSX2P35548 uc_338.14-201ENST00000613162 166 ntBASIC2.86□□□□□ -1.95
MSX2P35548 Y_RNA.778-201ENST00000620203 90 ntBASIC2.86□□□□□ -1.95
MSX2P35548 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.86□□□□□ -1.95
MSX2P35548 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.86□□□□□ -1.95
MSX2P35548 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.85□□□□□ -1.95
MSX2P35548 RNA5SP50-201ENST00000363731 107 ntBASIC2.85□□□□□ -1.95
MSX2P35548 SNORD32B-201ENST00000364460 84 ntBASIC2.85□□□□□ -1.95
MSX2P35548 RNU6-22P-201ENST00000384355 107 ntBASIC2.85□□□□□ -1.95
MSX2P35548 MIR569-201ENST00000385228 96 ntBASIC2.85□□□□□ -1.95
MSX2P35548 RNU6-578P-201ENST00000390980 103 ntBASIC2.85□□□□□ -1.95
MSX2P35548 RNU6-239P-201ENST00000390990 99 ntBASIC2.85□□□□□ -1.95
MSX2P35548 SNORA11.2-201ENST00000408318 127 ntBASIC2.85□□□□□ -1.95
MSX2P35548 RNU2-51P-201ENST00000410708 197 ntBASIC2.85□□□□□ -1.95
MSX2P35548 Z92545.1-201ENST00000411782 234 ntBASIC2.85□□□□□ -1.95
MSX2P35548 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.85□□□□□ -1.95
MSX2P35548 Z96811.1-201ENST00000445880 108 ntBASIC2.85□□□□□ -1.95
MSX2P35548 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.85□□□□□ -1.95
MSX2P35548 RNU6-426P-201ENST00000516464 97 ntBASIC2.85□□□□□ -1.95
MSX2P35548 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.85□□□□□ -1.95
MSX2P35548 MIR4744-201ENST00000581563 82 ntBASIC2.85□□□□□ -1.95
MSX2P35548 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
MSX2P35548 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
MSX2P35548 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.84□□□□□ -1.95
MSX2P35548 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.84□□□□□ -1.95
MSX2P35548 AC073325.2-201ENST00000339545 159 ntBASIC2.84□□□□□ -1.95
MSX2P35548 RNU6-103P-201ENST00000363686 107 ntBASIC2.84□□□□□ -1.95
MSX2P35548 U8.9-201ENST00000365667 134 ntBASIC2.84□□□□□ -1.95
MSX2P35548 RNU6-1083P-201ENST00000384022 107 ntBASIC2.84□□□□□ -1.95
MSX2P35548 Y_RNA.572-201ENST00000384757 98 ntBASIC2.84□□□□□ -1.95
MSX2P35548 SNORA48.5-201ENST00000391143 135 ntBASIC2.84□□□□□ -1.95
MSX2P35548 Y_RNA.586-201ENST00000391146 98 ntBASIC2.84□□□□□ -1.95
MSX2P35548 RNU6-855P-201ENST00000410395 104 ntBASIC2.84□□□□□ -1.95
MSX2P35548 RNU6-1328P-201ENST00000410938 106 ntBASIC2.84□□□□□ -1.95
MSX2P35548 CR769767.1-201ENST00000436337 346 ntBASIC2.84□□□□□ -1.95
MSX2P35548 Z75741.1-201ENST00000446793 314 ntBASIC2.84□□□□□ -1.95
MSX2P35548 BX510359.1-201ENST00000456973 237 ntBASIC2.84□□□□□ -1.95
MSX2P35548 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.84□□□□□ -1.95
MSX2P35548 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.84□□□□□ -1.95
MSX2P35548 AC007536.1-201ENST00000533382 349 ntBASIC2.84□□□□□ -1.95
MSX2P35548 MIR4431-201ENST00000579990 94 ntBASIC2.84□□□□□ -1.95
MSX2P35548 UBL5P2-201ENST00000583788 219 ntBASIC2.84□□□□□ -1.95
MSX2P35548 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
MSX2P35548 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
MSX2P35548 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.83□□□□□ -1.96
MSX2P35548 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
MSX2P35548 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
MSX2P35548 RNU6-899P-201ENST00000363947 107 ntBASIC2.83□□□□□ -1.96
MSX2P35548 RNU6-151P-201ENST00000364158 107 ntBASIC2.83□□□□□ -1.96
MSX2P35548 Y_RNA.456-201ENST00000384232 111 ntBASIC2.83□□□□□ -1.96
MSX2P35548 SNORA8.3-201ENST00000384679 139 ntBASIC2.83□□□□□ -1.96
MSX2P35548 SNORD15B-201ENST00000384714 146 ntBASIC2.83□□□□□ -1.96
MSX2P35548 MIR586-201ENST00000385035 97 ntBASIC2.83□□□□□ -1.96
MSX2P35548 SNORA26.7-201ENST00000391288 122 ntBASIC2.83□□□□□ -1.96
MSX2P35548 RN7SKP220-201ENST00000410611 288 ntBASIC2.83□□□□□ -1.96
MSX2P35548 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.83□□□□□ -1.96
MSX2P35548 EIF4EP4-201ENST00000424916 578 ntBASIC2.83□□□□□ -1.96
MSX2P35548 RPL21P10-201ENST00000463521 490 ntBASIC2.83□□□□□ -1.96
MSX2P35548 AC008155.2-201ENST00000464337 397 ntBASIC2.83□□□□□ -1.96
MSX2P35548 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.83□□□□□ -1.96
MSX2P35548 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.83□□□□□ -1.96
MSX2P35548 SCARNA8-201ENST00000515924 131 ntBASIC2.83□□□□□ -1.96
MSX2P35548 RNU6-479P-201ENST00000516348 105 ntBASIC2.83□□□□□ -1.96
MSX2P35548 AC023043.3-201ENST00000593113 385 ntBASIC2.83□□□□□ -1.96
MSX2P35548 RPL17P51-201ENST00000605218 238 ntBASIC2.83□□□□□ -1.96
MSX2P35548 AC091895.1-201ENST00000624494 256 ntBASIC2.83□□□□□ -1.96
MSX2P35548 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
MSX2P35548 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.83□□□□□ -1.96
MSX2P35548 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.83□□□□□ -1.96
MSX2P35548 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
MSX2P35548 Y_RNA.293-201ENST00000364908 93 ntBASIC2.82□□□□□ -1.96
MSX2P35548 Y_RNA.341-201ENST00000365341 102 ntBASIC2.82□□□□□ -1.96
MSX2P35548 RNU6-257P-201ENST00000410238 98 ntBASIC2.82□□□□□ -1.96
MSX2P35548 RNU7-141P-201ENST00000459304 62 ntBASIC2.82□□□□□ -1.96
MSX2P35548 HMGN2P9-201ENST00000476875 229 ntBASIC2.82□□□□□ -1.96
MSX2P35548 RNA5SP272-201ENST00000516095 111 ntBASIC2.82□□□□□ -1.96
MSX2P35548 RNU6-453P-201ENST00000516819 85 ntBASIC2.82□□□□□ -1.96
MSX2P35548 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
MSX2P35548 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.82□□□□□ -1.96
MSX2P35548 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.82□□□□□ -1.96
MSX2P35548 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.81□□□□□ -1.96
MSX2P35548 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
MSX2P35548 Y_RNA.24-201ENST00000362508 103 ntBASIC2.81□□□□□ -1.96
MSX2P35548 RNU6-1305P-201ENST00000364353 104 ntBASIC2.81□□□□□ -1.96
MSX2P35548 RNA5SP267-201ENST00000364893 126 ntBASIC2.81□□□□□ -1.96
MSX2P35548 MIR526A2-201ENST00000390198 65 ntBASIC2.81□□□□□ -1.96
MSX2P35548 NDUFB4P4-201ENST00000404822 243 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms