Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 Y_RNA.273-201ENST00000364703 102 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 RNU6-643P-201ENST00000384018 107 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 SNORD37.2-201ENST00000391075 66 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 RNU6-460P-201ENST00000391158 108 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 AL139281.1-201ENST00000422120 335 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 RPS29P2-201ENST00000479278 136 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 RPL36AP48-201ENST00000485521 314 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 AC117454.1-201ENST00000491120 168 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 AC006445.1-201ENST00000491925 405 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 MIR5004-201ENST00000579078 107 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 LARP7P3-201ENST00000579888 337 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 AL391516.1-201ENST00000554380 2449 ntBASIC4.03□□□□□ -1.76
CHMP3Q9Y3E7 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 RNU6-768P-201ENST00000384683 107 ntBASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 RNU6-376P-201ENST00000384731 106 ntBASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 AL035461.1-201ENST00000421490 332 ntBASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 AC092991.1-201ENST00000477176 376 ntBASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 Y_RNA.686-201ENST00000516548 134 ntBASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 RNU6-1098P-201ENST00000516772 96 ntBASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 AC010680.1-201ENST00000590024 3590 ntBASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHMP3Q9Y3E7 AC026241.1-201ENST00000517873 2142 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 AL365361.1-201ENST00000566942 3481 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 AL139095.1-201ENST00000404326 391 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 RNU4-47P-201ENST00000410876 114 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 CYCSP49-201ENST00000420810 319 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 CST9LP2-201ENST00000437612 320 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 HSPE1P21-201ENST00000438283 308 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 HMGN2P9-201ENST00000476875 229 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 SRIP1-201ENST00000489235 288 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 MIR449C-201ENST00000516047 92 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 RNA5SP341-201ENST00000516261 117 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 MIR4724-201ENST00000579485 89 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 AC068647.2-201ENST00000637380 353 ntBASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CHMP3Q9Y3E7 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
CHMP3Q9Y3E7 MIR367-201ENST00000362299 68 ntBASIC4□□□□□ -1.77
CHMP3Q9Y3E7 SNORD116-13-201ENST00000384408 92 ntBASIC4□□□□□ -1.77
CHMP3Q9Y3E7 MIR586-201ENST00000385035 97 ntBASIC4□□□□□ -1.77
CHMP3Q9Y3E7 AL355796.1-201ENST00000406706 323 ntBASIC4□□□□□ -1.77
CHMP3Q9Y3E7 Z98742.2-201ENST00000431564 187 ntBASIC4□□□□□ -1.77
CHMP3Q9Y3E7 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC4□□□□□ -1.77
CHMP3Q9Y3E7 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4□□□□□ -1.77
CHMP3Q9Y3E7 AC079598.5-201ENST00000547460 117 ntBASIC4□□□□□ -1.77
CHMP3Q9Y3E7 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4□□□□□ -1.77
CHMP3Q9Y3E7 MIR2682-201ENST00000580305 110 ntBASIC4□□□□□ -1.77
CHMP3Q9Y3E7 AC110774.1-201ENST00000623567 2018 ntBASIC4□□□□□ -1.77
CHMP3Q9Y3E7 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
CHMP3Q9Y3E7 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 SNORD32B-201ENST00000364460 84 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 SNORA51.4-201ENST00000364993 124 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 MIR1185-2-201ENST00000408687 86 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 RNA5SP229-201ENST00000410809 99 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 SNORA70.12-201ENST00000516084 153 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 UBL5P2-201ENST00000583788 219 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 AL138880.2-201ENST00000616214 239 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 MIR548AY-201ENST00000617669 107 ntBASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHMP3Q9Y3E7 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 RNU6-1325P-201ENST00000364905 105 ntBASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 MIR539-201ENST00000365690 78 ntBASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 Y_RNA.525-201ENST00000384570 113 ntBASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 RNU6-588P-201ENST00000410281 105 ntBASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 AC010401.1-201ENST00000463867 348 ntBASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 AL031274.2-201ENST00000599419 203 ntBASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 AC011603.4-201ENST00000611325 277 ntBASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 uc_338.25-201ENST00000613756 156 ntBASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CHMP3Q9Y3E7 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 SNORD14D-201ENST00000384390 87 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 RNU6-1228P-201ENST00000391014 107 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 SNORA48.8-201ENST00000391324 134 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms