Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
LIG3P49916 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
LIG3P49916 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
LIG3P49916 Y_RNA.23-201ENST00000362496 106 ntBASIC3.42□□□□□ -1.86
LIG3P49916 RNU6-271P-201ENST00000363858 105 ntBASIC3.42□□□□□ -1.86
LIG3P49916 RNA5SP387-201ENST00000364226 106 ntBASIC3.42□□□□□ -1.86
LIG3P49916 SNORA68.1-201ENST00000364537 132 ntBASIC3.42□□□□□ -1.86
LIG3P49916 Y_RNA.398-201ENST00000383952 99 ntBASIC3.42□□□□□ -1.86
LIG3P49916 RN7SKP111-201ENST00000410349 271 ntBASIC3.42□□□□□ -1.86
LIG3P49916 RNU5E-9P-201ENST00000411164 104 ntBASIC3.42□□□□□ -1.86
LIG3P49916 RNU6-57P-201ENST00000411348 103 ntBASIC3.42□□□□□ -1.86
LIG3P49916 TMSB4XP3-201ENST00000445144 114 ntBASIC3.42□□□□□ -1.86
LIG3P49916 RPL23AP7-203ENST00000449021 469 ntBASIC3.42□□□□□ -1.86
LIG3P49916 RNU6-221P-201ENST00000459541 99 ntBASIC3.42□□□□□ -1.86
LIG3P49916 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.42□□□□□ -1.86
LIG3P49916 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.42□□□□□ -1.86
LIG3P49916 FCF1P8-201ENST00000510322 597 ntBASIC3.42□□□□□ -1.86
LIG3P49916 MTND5P41-201ENST00000517498 206 ntBASIC3.42□□□□□ -1.86
LIG3P49916 Y_RNA.802-201ENST00000614892 130 ntBASIC3.42□□□□□ -1.86
LIG3P49916 MIR5739-201ENST00000619803 80 ntBASIC3.42□□□□□ -1.86
LIG3P49916 AC073476.4-201ENST00000628409 72 ntBASIC3.42□□□□□ -1.86
LIG3P49916 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.42□□□□□ -1.86
LIG3P49916 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
LIG3P49916 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
LIG3P49916 AC103988.1-201ENST00000566382 2177 ntBASIC3.41□□□□□ -1.86
LIG3P49916 AL159152.1-201ENST00000635019 2587 ntBASIC3.41□□□□□ -1.86
LIG3P49916 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LIG3P49916 Y_RNA.272-201ENST00000364696 102 ntBASIC3.41□□□□□ -1.86
LIG3P49916 RNA5SP267-201ENST00000364893 126 ntBASIC3.41□□□□□ -1.86
LIG3P49916 RNU6-438P-201ENST00000365561 103 ntBASIC3.41□□□□□ -1.86
LIG3P49916 Y_RNA.412-201ENST00000384001 104 ntBASIC3.41□□□□□ -1.86
LIG3P49916 SNORA20B-201ENST00000384220 132 ntBASIC3.41□□□□□ -1.86
LIG3P49916 SNORD14D-201ENST00000384390 87 ntBASIC3.41□□□□□ -1.86
LIG3P49916 FO393413.1-201ENST00000402892 195 ntBASIC3.41□□□□□ -1.86
LIG3P49916 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.41□□□□□ -1.86
LIG3P49916 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.41□□□□□ -1.86
LIG3P49916 AL121890.1-201ENST00000435457 205 ntBASIC3.41□□□□□ -1.86
LIG3P49916 AC021269.2-201ENST00000532318 330 ntBASIC3.41□□□□□ -1.86
LIG3P49916 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.41□□□□□ -1.86
LIG3P49916 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.41□□□□□ -1.86
LIG3P49916 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.41□□□□□ -1.86
LIG3P49916 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
LIG3P49916 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
LIG3P49916 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
LIG3P49916 Y_RNA.124-201ENST00000363339 93 ntBASIC3.4□□□□□ -1.87
LIG3P49916 RNU6-1205P-201ENST00000363625 106 ntBASIC3.4□□□□□ -1.87
LIG3P49916 RNU6-103P-201ENST00000363686 107 ntBASIC3.4□□□□□ -1.87
LIG3P49916 Y_RNA.333-201ENST00000365274 102 ntBASIC3.4□□□□□ -1.87
LIG3P49916 Y_RNA.357-201ENST00000365487 109 ntBASIC3.4□□□□□ -1.87
LIG3P49916 AL355796.1-201ENST00000406706 323 ntBASIC3.4□□□□□ -1.87
LIG3P49916 BMS1P22-201ENST00000414726 313 ntBASIC3.4□□□□□ -1.87
LIG3P49916 AL353705.1-201ENST00000433468 480 ntBASIC3.4□□□□□ -1.87
LIG3P49916 CYP2C59P-201ENST00000457790 269 ntBASIC3.4□□□□□ -1.87
LIG3P49916 AC016925.1-201ENST00000458303 298 ntBASIC3.4□□□□□ -1.87
LIG3P49916 RNU7-141P-201ENST00000459304 62 ntBASIC3.4□□□□□ -1.87
LIG3P49916 AC080013.2-201ENST00000460866 323 ntBASIC3.4□□□□□ -1.87
LIG3P49916 AC090515.1-201ENST00000465295 476 ntBASIC3.4□□□□□ -1.87
LIG3P49916 CKS1BP2-201ENST00000497342 240 ntBASIC3.4□□□□□ -1.87
LIG3P49916 AC005840.1-201ENST00000498412 377 ntBASIC3.4□□□□□ -1.87
LIG3P49916 RNA5SP217-201ENST00000515959 91 ntBASIC3.4□□□□□ -1.87
LIG3P49916 Y_RNA.797-201ENST00000515977 94 ntBASIC3.4□□□□□ -1.87
LIG3P49916 RNU6-948P-201ENST00000516374 107 ntBASIC3.4□□□□□ -1.87
LIG3P49916 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
LIG3P49916 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.4□□□□□ -1.87
LIG3P49916 AC096577.2-201ENST00000611455 153 ntBASIC3.4□□□□□ -1.87
LIG3P49916 MTND1P7-201ENST00000632801 297 ntBASIC3.4□□□□□ -1.87
LIG3P49916 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.4□□□□□ -1.87
LIG3P49916 AC009487.4-201ENST00000624969 3585 ntBASIC3.4□□□□□ -1.87
LIG3P49916 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
LIG3P49916 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
LIG3P49916 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LIG3P49916 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.39□□□□□ -1.87
LIG3P49916 AC080128.1-201ENST00000474389 1917 ntBASIC3.39□□□□□ -1.87
LIG3P49916 RNU6-275P-201ENST00000364910 107 ntBASIC3.39□□□□□ -1.87
LIG3P49916 RNU6-546P-201ENST00000383991 107 ntBASIC3.39□□□□□ -1.87
LIG3P49916 MIR626-201ENST00000385032 94 ntBASIC3.39□□□□□ -1.87
LIG3P49916 MIR613-201ENST00000385248 95 ntBASIC3.39□□□□□ -1.87
LIG3P49916 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
LIG3P49916 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.39□□□□□ -1.87
LIG3P49916 HSPE1P21-201ENST00000438283 308 ntBASIC3.39□□□□□ -1.87
LIG3P49916 AC016717.1-201ENST00000448918 286 ntBASIC3.39□□□□□ -1.87
LIG3P49916 HSPE1P13-201ENST00000451143 297 ntBASIC3.39□□□□□ -1.87
LIG3P49916 RPL23AP67-201ENST00000465341 474 ntBASIC3.39□□□□□ -1.87
LIG3P49916 RN7SL601P-201ENST00000471221 293 ntBASIC3.39□□□□□ -1.87
LIG3P49916 AC010598.1-201ENST00000510378 103 ntBASIC3.39□□□□□ -1.87
LIG3P49916 RNU6-346P-201ENST00000516288 111 ntBASIC3.39□□□□□ -1.87
LIG3P49916 RNU6-965P-201ENST00000516721 96 ntBASIC3.39□□□□□ -1.87
LIG3P49916 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.39□□□□□ -1.87
LIG3P49916 AC132825.6-201ENST00000638861 357 ntBASIC3.39□□□□□ -1.87
LIG3P49916 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.39□□□□□ -1.87
LIG3P49916 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
LIG3P49916 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.39□□□□□ -1.87
LIG3P49916 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
LIG3P49916 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
LIG3P49916 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
LIG3P49916 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
LIG3P49916 SNORA27.1-201ENST00000362604 124 ntBASIC3.38□□□□□ -1.87
LIG3P49916 RNU4-10P-201ENST00000364383 140 ntBASIC3.38□□□□□ -1.87
LIG3P49916 SNORD116-18-201ENST00000383961 92 ntBASIC3.38□□□□□ -1.87
LIG3P49916 RNU6-1235P-201ENST00000384559 107 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms