Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 HULC.1-201ENST00000612720 240 ntBASIC0.4□□□□□ -2.35
LIMS3P0CW19 AL390237.1-201ENST00000404226 1415 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 RNU6-1335P-201ENST00000365426 107 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 RNU6-1329P-201ENST00000365664 107 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 RNU6-945P-201ENST00000383947 107 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 MIR10B-201ENST00000385011 110 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 RNU6-248P-201ENST00000410720 107 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 MTATP6P18-201ENST00000417994 673 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 HSFY5P-201ENST00000453726 309 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 AC233266.1-201ENST00000454518 96 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 MTND2P39-201ENST00000457230 764 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 MTND1P22-201ENST00000510572 951 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.39□□□□□ -2.35
LIMS3P0CW19 RNU7-28P-201ENST00000516759 62 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 AC104576.1-201ENST00000524225 88 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 FRG2DP-202ENST00000566967 323 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 MIR4524B-201ENST00000581569 115 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 MIR4438-201ENST00000585271 93 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 AC234772.3-201ENST00000602277 528 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 AC005014.3-201ENST00000605985 190 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 AL096861.1-201ENST00000610899 123 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 AC242852.1-201ENST00000612151 96 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 AC244015.1-201ENST00000622301 99 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 AF246928.1-201ENST00000623768 87 ntBASIC0.39□□□□□ -2.35
LIMS3P0CW19 RNU6-784P-201ENST00000384330 106 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 MIR450B-201ENST00000401182 78 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 SNORD99-201ENST00000408612 74 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC0.38□□□□□ -2.35
LIMS3P0CW19 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.38□□□□□ -2.35
LIMS3P0CW19 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.38□□□□□ -2.35
LIMS3P0CW19 AC092423.1-201ENST00000430165 186 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 AC104332.1-201ENST00000440471 797 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 AC093850.1-201ENST00000454121 251 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 RPL23AP75-201ENST00000491601 451 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 OR9P1P-201ENST00000496431 281 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.38□□□□□ -2.35
LIMS3P0CW19 AC091133.4-201ENST00000511142 308 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 RNU7-12P-201ENST00000516030 62 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 RNA5SP458-201ENST00000516188 119 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 SNORD111.1-201ENST00000516421 86 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 RNU6-232P-201ENST00000517144 64 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 AC022868.1-201ENST00000517767 391 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 Z83818.1-201ENST00000603584 150 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 MIR8076-201ENST00000611401 83 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
LIMS3P0CW19 AC079248.2-201ENST00000623779 326 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.38□□□□□ -2.35
LIMS3P0CW19 MIR6079-201ENST00000635807 62 ntBASIC0.38□□□□□ -2.35
LIMS3P0CW19 FGF7P2-201ENST00000332473 296 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 SNORD115-8-201ENST00000363856 82 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 RNU6-553P-201ENST00000364047 96 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 SNORD115-38-201ENST00000365037 82 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 RNU6-17P-201ENST00000384245 107 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 RNU6-18P-201ENST00000384527 107 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 MIR562-201ENST00000384894 95 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 Y_RNA.595-201ENST00000410403 105 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 MTCYBP8-201ENST00000422855 651 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.37□□□□□ -2.35
LIMS3P0CW19 RNU7-63P-201ENST00000459054 62 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.37□□□□□ -2.35
LIMS3P0CW19 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.37□□□□□ -2.35
LIMS3P0CW19 CCDC34P1-201ENST00000507441 517 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 RNU6-189P-201ENST00000516120 101 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.37□□□□□ -2.35
LIMS3P0CW19 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.37□□□□□ -2.35
LIMS3P0CW19 AC122133.1-201ENST00000613964 233 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 AC006435.5-201ENST00000624486 112 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 AC005609.4-201ENST00000625071 447 ntBASIC0.37□□□□□ -2.35
LIMS3P0CW19 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
LIMS3P0CW19 MIR487A-201ENST00000385009 80 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 AL606923.1-201ENST00000406616 190 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 MTCO2P11-201ENST00000431069 680 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 MRPS10P1-201ENST00000448483 130 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 RNU7-125P-201ENST00000458760 62 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.36□□□□□ -2.35
LIMS3P0CW19 RNU4-57P-201ENST00000515980 135 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 RNU2-56P-201ENST00000516826 190 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 RNA5SP102-201ENST00000516865 106 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 RNU6-1198P-201ENST00000516904 67 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 RNU6-58P-201ENST00000517143 103 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.36□□□□□ -2.35
LIMS3P0CW19 AC072046.2-201ENST00000618366 268 ntBASIC0.36□□□□□ -2.35
LIMS3P0CW19 SNORD87-201ENST00000364849 89 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 RNU6-996P-201ENST00000365438 107 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 MIR521-1-201ENST00000384902 87 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.35□□□□□ -2.35
LIMS3P0CW19 AC114737.2-201ENST00000421583 173 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 AC092628.1-201ENST00000436250 252 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 AC093019.1-201ENST00000443135 252 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 USP9YP29-201ENST00000445112 563 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.35□□□□□ -2.35
LIMS3P0CW19 AC073415.1-201ENST00000449240 153 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 MTCO3P38-201ENST00000468910 766 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.35□□□□□ -2.35
LIMS3P0CW19 RNU4ATAC8P-201ENST00000516196 109 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 AC004223.2-201ENST00000590309 544 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 AC010620.1-201ENST00000601088 1102 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 AC103705.1-201ENST00000619013 241 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 AC068787.1-201ENST00000623908 691 ntBASIC0.35□□□□□ -2.35
LIMS3P0CW19 RNU4-21P-201ENST00000362802 126 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 334.5 ms