Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 TPSP2-201ENST00000561760 610 ntBASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 AC012615.1-201ENST00000565797 1299 ntBASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 MIR3917-201ENST00000580971 93 ntBASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 AC104692.2-201ENST00000603054 253 ntBASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 AC079602.3-201ENST00000623931 403 ntBASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 AC112497.1-201ENST00000624824 639 ntBASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PCDHGA1Q9Y5H4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 AL691432.2-201ENST00000607222 2038 ntBASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 EMBP1-201ENST00000458200 901 ntBASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 AL031008.1-201ENST00000619963 541 ntBASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 AP005212.1-201ENST00000581547 1997 ntBASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 AL391807.1-203ENST00000604392 2365 ntBASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA1Q9Y5H4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PCDHGA1Q9Y5H4 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 AC009078.2-202ENST00000463353 338 ntBASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 AL157888.1-201ENST00000631930 593 ntBASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms